Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1115 ATGACGCCGACGGCCGCGACGATGTCGTTCCAATGCGCCGTTGTGTTCGCTCCCAAGCAATCTCTTTCTTTGCCAACTCTCTCTCCATTTCCGACAACAGCCCACAAACCTCTCTCCCTATTCACTCAAACCCTTCAACTCTCTGCAACCCATCTCACTCTCAAAGCTTTGATTTCTATCTCCAGATCAGAATCCAAGAAGAATGTGAAATGTGGGTGCGCAGTCTCTTCCGAGCTCAGCAATGATGGTGGTTTCATTGTCGTTAATTTCTACCGCTTTGTCTTCATCCAAGACCCTGAATTGGAGGTCTCCAAACACCTCTCCTTCTTGCAGGGCTTTGACATACATGGCCGAGTATATATAAATGAGCAAGGCATTAATGCACAGTACAGTGGGCCATCAAAGGATGCTCTTGCATATGTTGAATGGTTAAGAGAAGACCACAGATTTTCTGATATACTGGTTCAGATTTCTCCAGCTTCAAATGGACATGCCTTTCCAAAATTGAAGCTGCGGTATAAGCCCTCATTAGTACAGTTAGAGGGAGGTATTTCACATATTCCTTTGCTTGATCCTTTGCTGCGGGCAACAGCTTTGGCACCGTCAGAATGGAGGAAAAGATTGGAAGCAGTAAATAAAATTGATGATGCATCAAATGAGAATTCAAATGCAAACTGTATTCTATTGGATGTGAGAAACGGTTATGAGTGGGATGTTGGTCATTTTCGTGGTGCTCAACGACCTGATGTGGACTGCTTTAGGAGCACTTCATTTGGGCAATCCCAATCAGAGGTTATTGTTTCAGATCCTTTAGCAAATGTTGACAAAGAAAAAACAGATATATTGATGTATTGTACTGGAGGTATCCGTTGTGATGTGTATTCTGCAATTCTAAGACAAAGGGGATTCCAGAACTTGTACACTTTGAAGGGTGGCGTTTCTCATTATCTTGAGAAGGAAGGTCCTATGGAATGGATTGGGAATTTGTTTGTATTTGATTCCCGTCTCTCTCTCCCGCCTTCTACCTACAAGACTGAGGCCGTGAGTGAGACAAGCGGGGCTCACCAAGTATCTGAGGGTAGTACATTTGCTAGATGCTACATATGCAACTCACAACTCCATGAGTTAAGGCATCGGAATTGTGCCAATCTTGACTGCAATCTCCTTTTTCTATGTTGTACACAGTGCTTAAAGGATTTAAGAGGATGCTGCTGTTTGGACTGCACATCAGCACCTCGGCTTAGACCTGTTCTTCCTGGACACCAAAGGTACAAAAAATGGTATATTTATAGAGACATGGAGCTTCAGACCAACTCAACGGCTTAG 1326 0.4374 MTPTAATMSFQCAVVFAPKQSLSLPTLSPFPTTAHKPLSLFTQTLQLSATHLTLKALISISRSESKKNVKCGCAVSSELSNDGGFIVVNFYRFVFIQDPELEVSKHLSFLQGFDIHGRVYINEQGINAQYSGPSKDALAYVEWLREDHRFSDILVQISPASNGHAFPKLKLRYKPSLVQLEGGISHIPLLDPLLRATALAPSEWRKRLEAVNKIDDASNENSNANCILLDVRNGYEWDVGHFRGAQRPDVDCFRSTSFGQSQSEVIVSDPLANVDKEKTDILMYCTGGIRCDVYSAILRQRGFQNLYTLKGGVSHYLEKEGPMEWIGNLFVFDSRLSLPPSTYKTEAVSETSGAHQVSEGSTFARCYICNSQLHELRHRNCANLDCNLLFLCCTQCLKDLRGCCCLDCTSAPRLRPVLPGHQRYKKWYIYRDMELQTNSTA* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1115 441 Gene3D - 194 356 IPR036873 -
Vvi17g1115 441 Gene3D - 74 178 - -
Vvi17g1115 441 SMART rhod_4 212 322 IPR001763 -
Vvi17g1115 441 CDD RHOD_YceA 196 318 - -
Vvi17g1115 441 Pfam Rhodanese-like domain 221 318 IPR001763 -
Vvi17g1115 441 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 209 339 IPR036873 -
Vvi17g1115 441 Pfam UPF0176 acylphosphatase like domain 87 175 IPR040503 -
Vvi17g1115 441 ProSiteProfiles Rhodanese domain profile. 222 325 IPR001763 -
Vvi17g1115 441 Pfam Rhodanase C-terminal 327 409 IPR022111 -
Vvi17g1115 441 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 80 432 IPR020936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1115 Vvi-Chr17 15675901 15697296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1115 17 437 Sulfurtransferasese or Rhodanese AT1G17850 61.086 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1115 - - vvi:100254727 906.746