Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1108 ATGCTTAGGGAGGATGTTGCTGCAAACAGAGCAACTGGGTTGTATGGAGCAAGTTTTCTTCGAGGCCATATAAAAAACTCTAAGGGTCTGTCTATTTTGACACATTGCAACACTGGAAGTCTTGCAATAGCTGGATATGGCACTGCTCTCGATGTAGATATTACTCCTGAGGATCCACATGTGGGGTTAGGAGGACTTCAGGATGCTCTTAGAGCGGCCTAG 222 0.4595 MLREDVAANRATGLYGASFLRGHIKNSKGLSILTHCNTGSLAIAGYGTALDVDITPEDPHVGLGGLQDALRAA* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1108 73 Gene3D - 1 55 IPR027363 -
Vvi17g1108 73 SUPERFAMILY NagB/RpiA/CoA transferase-like 1 52 IPR037171 -
Vvi17g1108 73 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 1 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1108 Vvi-Chr17 15529052 15532168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1108 1 52 Eukaryotic Initiation Factors Gene Family AT2G05830 63.462 4.82e-16 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1108 K08963 - vvi:100268031 91.2781