Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1095 ATGAATGAGAAAGCGTCTGTGTCCAAGGAGCTCAACGCCAAGCACTCCAAGATATTGGAGGGTCTTCTCAAGCAGCCGGAGAATAGGGAATGTGCAGATTGTCGAAGCAAGGCTCCACGATGGGCAAGTGTAAACCTTGGAATATTTATATGCATGCAATGTTCAGGAATCCATAGGAGTCTTGGAGTACATATCTCAAAGGTACGGTCCACTACTTTGGATACATGGCTACCAGAGCAGGTTGCTTTCATGCAGTCAATGGGTAATGAGAGGTCTAACGATTATTGGGAAGCGAATCTGCCGCCCAATTATGACAGAAGTGAGAATGAGAGATTTATCCGCGCCAAGTATGTGGAGAAAAAATGGGTTTCAAAGAAAGCAACACAACCAACTACAAAGCCAAGTGAAAAGAGTAGTAATTTCCACAAGTCAATGGAAAGTGGAACTAGAAGTGGGATTCGTAGTAAAACAAGGAAATTGTCTCTTGAGGAAGAAATTTTTACTAACCATATAGCTCAAATTGCTCCTCCAGCAGGAAGAACCCGATGGGGTTCTTTAGATCTGAATAAGATTTCACCACCTGAAAAAGGACCACCATTCACAGGATGCAACACATCCTTGAATAAGGGTAATGCTACTACAGATCTCTTCCACTTGCCTTATGTTCAAGATGCAAAACCAAGGCGATCTATTGCATCTTCTTCGTACTACTCTTCCTGGGCGACCTTTGAGTGTAAGAACAAACCATACTTTTATCCTATGCTCTATAAATTATGA 777 0.4221 MNEKASVSKELNAKHSKILEGLLKQPENRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNERSNDYWEANLPPNYDRSENERFIRAKYVEKKWVSKKATQPTTKPSEKSSNFHKSMESGTRSGIRSKTRKLSLEEEIFTNHIAQIAPPAGRTRWGSLDLNKISPPEKGPPFTGCNTSLNKGNATTDLFHLPYVQDAKPRRSIASSSYYSSWATFECKNKPYFYPMLYKL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1095 258 CDD ArfGap 19 117 - -
Vvi17g1095 258 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Vvi17g1095 258 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vvi17g1095 258 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vvi17g1095 258 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vvi17g1095 258 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Vvi17g1095 258 SMART arf_gap_3 13 130 IPR001164 GO:0005096
Vvi17g1095 258 SUPERFAMILY ArfGap/RecO-like zinc finger 15 125 IPR037278 -
Vvi17g1095 258 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Vvi17g1095 258 MobiDBLite consensus disorder prediction 124 156 - -
Vvi17g1095 258 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Vvi17g1095 258 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 246 IPR044520 GO:0005096
Vvi17g1095 258 MobiDBLite consensus disorder prediction 125 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1095 Vvi-Chr17 15114077 15135389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1095 19 144 C2H2 Transcription Factor Family AT4G05330 45.522 7.78e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1095 K12486 - vvi:100266762 492.656