Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1091 ATGTTAATCTATGAATACATGCCTAACAAAAGCTTGGACTTCTTCATCTTTGATCCAACAAGAAAAGAATTGCTAGATTGGAAGAAACGTTTTAGCATCATTGAGGGGATTGCTCAAGGATTACTCTATCTTCATAAGTACTCCAGACTAAGGGTGATTCATAGAGACTTAAAAACAAGTAATATTTTATTAGATAACGACATGAACCCTAAAATTTCAGATTTTGGCATGGCAAAAATGTTTAGACAAGATCAATCGAGGGCAAATACAAATAGGGTCGTGGGCACATTGTAA 294 0.3469 MLIYEYMPNKSLDFFIFDPTRKELLDWKKRFSIIEGIAQGLLYLHKYSRLRVIHRDLKTSNILLDNDMNPKISDFGMAKMFRQDQSRANTNRVVGTL* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1091 97 SUPERFAMILY Protein kinase-like (PK-like) 1 96 IPR011009 -
Vvi17g1091 97 ProSiteProfiles Protein kinase domain profile. 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g1091 97 Gene3D Transferase(Phosphotransferase) domain 1 1 97 - -
Vvi17g1091 97 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 7 97 - -
Vvi17g1091 97 ProSitePatterns Serine/Threonine protein kinases active-site signature. 52 64 IPR008271 GO:0004672|GO:0006468
Vvi17g1091 97 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 97 - -
Vvi17g1091 97 Pfam Protein kinase domain 2 96 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1091 Vvi-Chr17 15066109 15066507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1091 1 97 Receptor kinase-like Gene Family AT4G23230 62.887 3.15e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi17g1091 Pkinase 2.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1091 - - vvi:100258202 196.823