Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1087 ATGTCGCTTAGTGGCTTCTCCGGCGGCAGCGGCGGCGGCGGCCCTGGTGGTGGCTCCGCCGCTCCTCAGTCCTACTTCTGCTACCAGTGCAACCTTACGGTCTCCATCACCCCTTCTCCCACCTCCGATCCTCTCTGCCCTCATTGCAACGATGGCTTTCTCGAGGAGGTTGAAAACCCTAATCCTAACCCTATCCCCGTCCCAATCCCCAATCCCTTCTTAGGTTTCTCCGATTTGCCCTCTCTATCCGCCGCCGGCGCCACAGCCACTGCCTTCCCTCCGCTTGTCTTCTCAACCGCTGCCGGAGGGAGCATCGATCTCCAGAACTCCGTCGATTTCCCCGGTCTGTTCGGGGCAGACCCCGATGCGTTCCACCCCTTTGCTTTCCTACAGAATTATCTGCAAACCCTAAGGGCAGGTGGCACGAACGTTCAATTTGTGATTGACGGTAACTCGCCGGAGGGTACGTTCCGGCTTTCGCCAAACCTCGGGGACTACTTCATTGGACCGGGGCTGGAGCAGCTGATCCAGCAGCTGGCGGAGAACGATCCGAACCGGTACGGTACGCCGCCGGCATCGAAATCAGCGATTGAGGGGCTTCCGACCATTCGGATTACGGTGGAATTGTTGGGAACGGATTCGTCGCAGTGTGCGGTGTGCAAGGACAGCTTTGAGCTCGATGAGGAGGCCAAGCAGATGCCTTGTAAGCACATTTACCATAACGATTGTATTCTACCTTGGTTGGAACTGCATAATTCGTGTCCGGTCTGTCGGTACGAGTTGCCCACCGATGATCCCGACTACGAGCACCGCACTCGGGGTGGCCAAGTCAATCAAACTGGCGGAAATGCTGCTGCGGTGGCTGCTGCTGGGGCTGCTTCGAACTCAGCTTCTGGTGCTGCTGGTGGGGCAGCAGTTTCTGGAGAGAATCCGAATCCTCAGACCCCTAGGACTGCAGATAGGATGTTTAGGATCTCATTTCCATGGCCGTTTCGGACATTTGGATCCCCTGCTGAGACTAGCAACAGCAACAATGATGGGGGATCGAACCCGGGGAACAGGGCAAATCAGGAGTCTGGATCAGAAAACAGGCAAGGAGATCAGACTTGA 1110 0.5676 MSLSGFSGGSGGGGPGGGSAAPQSYFCYQCNLTVSITPSPTSDPLCPHCNDGFLEEVENPNPNPIPVPIPNPFLGFSDLPSLSAAGATATAFPPLVFSTAAGGSIDLQNSVDFPGLFGADPDAFHPFAFLQNYLQTLRAGGTNVQFVIDGNSPEGTFRLSPNLGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEGLPTIRITVELLGTDSSQCAVCKDSFELDEEAKQMPCKHIYHNDCILPWLELHNSCPVCRYELPTDDPDYEHRTRGGQVNQTGGNAAAVAAAGAASNSASGAAGGAAVSGENPNPQTPRTADRMFRISFPWPFRTFGSPAETSNSNNDGGSNPGNRANQESGSENRQGDQT* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1087 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 116 262 - -
Vvi17g1087 369 Pfam zinc-ribbon 23 56 IPR039525 GO:0061630
Vvi17g1087 369 SMART ring_2 217 257 IPR001841 -
Vvi17g1087 369 ProSiteProfiles Zinc finger RING-type profile. 217 258 IPR001841 -
Vvi17g1087 369 MobiDBLite consensus disorder prediction 296 369 - -
Vvi17g1087 369 Pfam Ring finger domain 216 258 IPR001841 -
Vvi17g1087 369 MobiDBLite consensus disorder prediction 335 369 - -
Vvi17g1087 369 CDD RING-H2_RNF126-like 216 258 - -
Vvi17g1087 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 264 IPR013083 -
Vvi17g1087 369 FunFam E3 ubiquitin-protein ligase RING1-like 178 264 - -
Vvi17g1087 369 SUPERFAMILY RING/U-box 205 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1087 Vvi-Chr17 14868191 14869300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1087 175 274 C3H Transcription Factor Family AT5G15820 51.000 4.30e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1087 K11982 - vvi:100244372 675.626