Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1083 ATGTTCATGATGCACCATCCTAATCTGGAACGCTACATATGTTGGCTAAGGAAAAATGATTATGTTGTAAAACAAAACCCCGTCTTGATTGAAGGCAACCTTCACAAATATGACCGTTGGAAAAAACACTGGGTTTCTCCAAGGCCTATCCTCAGTAAGCTGGCACGATCCTCAAGAACTGGTACATTGTCATTAAGTCTCACCCTTGCAAGATTGTGGAAGTTTCCACCTCCAAGATCGGCTAGCATGGTCATGCTAAGTGTAACTTCGTTGGGATTGATGTCTTCAGTGGGAAAAAAACTTGAAAAAGTTGTTCCATCCTCCCATAATTGTGATGTTCCTCATGTCAATGGTACTGATTACCAGTTGATCGATATTCTTGAGGATGGATACTCGGACGTCAAGGTTAGAGTAACTCCGATGGGCATGGAGATCATCATTCGTGCCACTCGGACTCAGAATGCTCTCAGTGAAAAAGGAAGAAGGATCAGGGAGCTGACTTTAGTGGTTTAG 513 0.4308 MFMMHHPNLERYICWLRKNDYVVKQNPVLIEGNLHKYDRWKKHWVSPRPILSKLARSSRTGTLSLSLTLARLWKFPPPRSASMVMLSVTSLGLMSSVGKKLEKVVPSSHNCDVPHVNGTDYQLIDILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLVV* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1083 170 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 8 132 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vvi17g1083 170 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 127 169 IPR009019 GO:0003723
Vvi17g1083 170 Gene3D - 123 170 IPR015946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1083 Vvi-Chr17 14740610 14741145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1083 125 170 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 76.087 2.92e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1083 K02985 K10841 ncol:116253752 71.2478