Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1080 ATGAGAGCCAAGAATGGTGGAACAAGCAAAAGGAGAACCATCATGACTTCTTCATTAATGAATCTAAAACCTAGAGGTTGTTCACTTTTGTCAAGATCCATGGCCACCACCACAACTTCTCGCTCCGATAAAGCTGAAAATGTTGTTCCAGTAGATTTGCATCGCAAGACACCAGTCAAAGTTGGGGCAACTGCTGGTTTAAGGGCATTAGGAATTGATGCATCTAATAGGATTTTGCAAGCGGTCAAGAATTTTCTTAAAGTCAAAAGCACCCTAAAATCCAAGCCAGAATGGGTCACTGTCTTAGATGGAATGCAAGAAGGTGCTTTTTAG 333 0.4144 MRAKNGGTSKRRTIMTSSLMNLKPRGCSLLSRSMATTTTSRSDKAENVVPVDLHRKTPVKVGATAGLRALGIDASNRILQAVKNFLKVKSTLKSKPEWVTVLDGMQEGAF* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1080 110 Pfam GDA1/CD39 (nucleoside phosphatase) family 43 110 IPR000407 GO:0016787
Vvi17g1080 110 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 42 110 IPR000407 GO:0016787
Vvi17g1080 110 Gene3D - 15 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1080 Vvi-Chr17 14694662 14695237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1080 32 110 Calmodulin-binding Proteins AT3G04080 56.962 1.28e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1080 K14641 - vvi:100267968 124.405