Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1079 ATGGTTTCAGAGAAGAAACTCTCAAACCCAATGAGGGACATCAAGGCCCAGAAGCTCGTCCTCAACATCTCCATTGGAGAAAGTGGAGATCGCCTCACCAGAGCCGCTAAGATACATTCAATGCAGCTTCTTGAGAGTGGTTTGAAGGTCAAGGAATATGAGTTGCTGTTGAGGTCACTGGAGGGCCTGAAATTCCTTTCCACCCAGGGAGAGAGGACAAGCCGGAGCCACCACCTGAGGGTCGTCTGCCAGATGTGCCACAAGGAGCGCTCTGGATTTGAAGGACCTTGGACTTCCAATCCTCTGATCTTTGATAACAGCTACTTCACGGAACTCCTTGGCGAAGAAAAGGAAGGTCTTCTATAG 366 0.5 MVSEKKLSNPMRDIKAQKLVLNISIGESGDRLTRAAKIHSMQLLESGLKVKEYELLLRSLEGLKFLSTQGERTSRSHHLRVVCQMCHKERSGFEGPWTSNPLIFDNSYFTELLGEEKEGLL* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1079 121 PRINTS Plant ascorbate peroxidase signature 89 113 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi17g1079 121 PRINTS Plant ascorbate peroxidase signature 115 121 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi17g1079 121 SUPERFAMILY Heme-dependent peroxidases 84 114 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi17g1079 121 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 3 37 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vvi17g1079 121 Gene3D - 3 78 IPR022803 -
Vvi17g1079 121 Gene3D Peroxidase, domain 2 85 120 - -
Vvi17g1079 121 FunFam Uncharacterized protein 3 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1079 Vvi-Chr17 14688877 14689457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1079 1 60 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 51.020 6.02e-22 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1079 K02868 - vvi:100246959 144.05