Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1026 ATGCCGCGTCCGATGAGCTTCTTTGTGGAAGAAGATGAAGATATGCTGATGGACGCCGATGGCAACAATGTCGAGCACGTTCCTCAGCACGACCCCCACCGCCACCATCCTCAGCGTCAGCACCTCCAGCAGATACTTCTGACTGAGAGCAGTGGAGAGGACATCGAAATCAAAGTGCCCAGAAGGCGAGCCGAGACATGGGTCCATGATGAAACTCATAGCCTCATCGCATTCCGTAGAGAATTGGATGAGTTCTTCAATACTTCCAAATCCAACAAGCATCTCTGGGAGCAAATTGCTGCTAGAATGAGCGAACTGGGGTATGATCGGACCGCAGCCATGTGTACTGACAAGTGGAGAAACCTGCTGAAGGATTACAAGAAGGCGCAGCAGCGTGATGGAGGAAGCGGGAAGATGTATTACGAAGAGCTCGAAGAGTTTTATGCGGAGAAGAAGAGAAATGATCCGTACAGGAAGATTACTTCTTCTAGGGCTCCATTCATGCACATTTCCGAAAAAGATGGTCGCAAGGCACGATTTAATTCTGAAAAGGTTATGGATTATGACCAACACAGTCTTGGCATTAGTGAAGCTGAAGTTGTTGCAGCCAATGGACTTCCCCCCTGGAATCGGAAAGAAACCCCTGGAAGTGGCACGGAGAATGAGTCTGCATATACAGGGAGGGTTATATGGGTGAATTATGGGGAATGCACTAAGAGGATTGGCATTGATGGCTCCTCAGATTCAATCAAGGAGGCAATCAGGTCTTCTTTTGGCCTAAGAACCAATCGGGCATTTTGGTTGGAGGATGAAAATGAGATAGTGCGAAGTCTTGACAGAGACATGCCATTGACAACTTATACTCTTTGTCTTGATGCAGGATTGACTATAAAAATCTGTCTTTATGACCAGCCATGCCAGCTACTACCAGTTCGTACTGAGGAGAAAACGTTTTACTGTGAAGATGATCTTCGCGATTTTCTCCACCACCGTGGCTGGATGGGTCTAAGAAGATTTAAGCTGCTATAA 1029 0.4704 MPRPMSFFVEEDEDMLMDADGNNVEHVPQHDPHRHHPQRQHLQQILLTESSGEDIEIKVPRRRAETWVHDETHSLIAFRRELDEFFNTSKSNKHLWEQIAARMSELGYDRTAAMCTDKWRNLLKDYKKAQQRDGGSGKMYYEELEEFYAEKKRNDPYRKITSSRAPFMHISEKDGRKARFNSEKVMDYDQHSLGISEAEVVAANGLPPWNRKETPGSGTENESAYTGRVIWVNYGECTKRIGIDGSSDSIKEAIRSSFGLRTNRAFWLEDENEIVRSLDRDMPLTTYTLCLDAGLTIKICLYDQPCQLLPVRTEEKTFYCEDDLRDFLHHRGWMGLRRFKLL* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1026 342 CDD GT1 65 129 - -
Vvi17g1026 342 Gene3D - 67 129 - -
Vvi17g1026 342 ProSiteProfiles Myb-like domain profile. 59 123 IPR001005 -
Vvi17g1026 342 Pfam Myb/SANT-like DNA-binding domain 66 146 IPR044822 -
Vvi17g1026 342 PANTHER FI21293P1 36 335 - -
Vvi17g1026 342 SUPERFAMILY Homeodomain-like 66 125 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1026 Vvi-Chr17 12796714 12805848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1026 44 339 Trihelix Transcription Factor Family AT3G25990 49.846 2.23e-104 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi17g1026 Myb_DNA-bind_4 8.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1026 - - vvi:100265024 680.633