Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1023 ATGGAGAAAATGCAACCTTTGGATCTATTAGAGACCTTGGTTCGCACCACTGGTGGCATGAAAGAGAAAACCGACGGGGAGGAATCTTCACCATGCGCAGCCATGCCGGCTGCCCAAGATGTTTCACAAGAATGCAAGGAACTTGACATTACTGTTCTTCATGTCAAGCTTCATGCCGCTAGAGGAAATAAGACTAAGACACCTGGTCCTGGTGCCCAGTCCGCTCTCCAAGCCCCTTGCTCGTTCTGGAATGAGAATGTGGCTGTAACCCCATTTCCCACTCATTCATCCCTATTCTCATTCACGTGCAGGCATCCTAAAACATTCTCCCAAGCCTTCTCATAA 345 0.487 MEKMQPLDLLETLVRTTGGMKEKTDGEESSPCAAMPAAQDVSQECKELDITVLHVKLHAARGNKTKTPGPGAQSALQAPCSFWNENVAVTPFPTHSSLFSFTCRHPKTFSQAFS* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1023 114 Gene3D Ribosomal protein S11 7 95 IPR036967 GO:0003735|GO:0005840|GO:0006412
Vvi17g1023 114 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 11 95 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vvi17g1023 114 Pfam Ribosomal protein S11 11 95 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vvi17g1023 114 SUPERFAMILY Translational machinery components 11 78 - -
Vvi17g1023 114 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1023 Vvi-Chr17 12706475 12706819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1023 11 97 Cytoplasmic Ribosomal Protein Gene Family AT2G36160 64.444 1.46e-31 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1023 K02955 - pvy:116116411 105.531