Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1021 ATGGCTTCTGATCTGTTGAGTGAAGAAAGGAGTGATGAGGTGAGTGGTCTTGATACCAGCCTTTCGGCTCAGGCTTACTATTCTCGCTCTTATCTGCCCATATTCCAGAATGGTTCTGCTACTAATTGGTTCCACTACTCGGATGAAGCTAGAAACCACAAGAGGCTTAAACGAACCCAAAGTATAGCTGAATCCATCGGAAGTAATAGCAGCCTTTATAGTGGTGGAAAAAGCTATAGTAACAGCAGCAGCAGTTTTATCAACCGCAGTAGCAGTACTAATAGCTTGAATAGCTTGCCAAGGCTCCATTTTCGAGATCATATATGGACTTATACTCAAAGATACCTTGCAGCTGAAGCTGTGGAAGAAGCAGCAGCAGCCATGATCAGTGCTGCAGAAGGTGAAGTTGAGGAAGATGGAAGTGGGGACGGGATGAGGTTGGTTCAGCTTCTCATTGCTTGTGCTGAAGCTGTGGCTTGTCGTGACAAGACACATGCCTCATCGCTATTATCAGAGCTTCGAGCCAATGCTTTAGTCTTCGGCTCTTCATTCCAGCGTGTGGCATCCTGCTTTGTCCAAGGCCTCGCGGACCGGCTGTCTTTGGTTCAACCACTTGGGGCAGTTGGTTTTATAGCACCGTCCATCAACCCATTGGACACAGCCTGGGAGAAAAAGGAGGAAGCCTTACGTCTTGTTTATGAAATTTGCCCACATATTAAGTTTGGTCACTTTGTGGCCAATGCTTCAATATTGGAAGCCTTTGAGGGAGAGAATTTTGCCCATGTCGTTGACTTGGGCATGACACTTGGCCTAGCACATGGTCAGCAATGGCGCCAGCTGATCCATAGCCTAGCCAATCGTGCAGGCCGACCACCACGTCGTCTTAGGATCACTGGTGTCGGCCTTTGTGTAGACCGGTTCAAAATTATAGGTGAGGAGCTTGAGGCTTACGCCCAGGACTTGGACATAAACTTGGAGTTTTCAGCAGTGGAAAGCAACTTGGAAAATCTTCGGCCTGAAGACATCAAACGTGAAGATGGGGAAGCTCTTGTTGTCAACAGCATCCTTCAATTGCACTGTGTGGTCAAGGAAAGCCGCGGAGCTTTAAACTCGGTCCTGCAGAAAATCAACGAGCTCTCACCCAAGGTTTTAGTCCTGGTTGAGCAGGACTCAAGCCATAACGGACCCTTCTTTCTTGGGAGGTTCATGGAAGCACTTCATTACTACTCTGCAATCTTTGACTCCCTAGAAGCAATGCTACCTAAGTATGATACTAGGCGCGCCAAAATAGAACAGTTTTACTTTGGGGAGGAGATAAAGAACATAGTGAGTTGCGAAGGGCCAGCAAGGGTGGAGCGGCATGAGAGGGTGGACCAGTGGCGCAGGAGGATGAGTCGTGCCGGGTTTCAGGCTGCACCCATTAAGATGATGGCTCAGGCCAAGCAATGGCTGGGGAAAGTTAAGGCCTGTGAAGGGTATAATATTATGGAAGAGAAGGGATGCTTGGTGCTGGGCTGGAAATCAAAGCCTATTGTGGCAGCCTCTTGCTGGAAATGCTGA 1560 0.484 MASDLLSEERSDEVSGLDTSLSAQAYYSRSYLPIFQNGSATNWFHYSDEARNHKRLKRTQSIAESIGSNSSLYSGGKSYSNSSSSFINRSSSTNSLNSLPRLHFRDHIWTYTQRYLAAEAVEEAAAAMISAAEGEVEEDGSGDGMRLVQLLIACAEAVACRDKTHASSLLSELRANALVFGSSFQRVASCFVQGLADRLSLVQPLGAVGFIAPSINPLDTAWEKKEEALRLVYEICPHIKFGHFVANASILEAFEGENFAHVVDLGMTLGLAHGQQWRQLIHSLANRAGRPPRRLRITGVGLCVDRFKIIGEELEAYAQDLDINLEFSAVESNLENLRPEDIKREDGEALVVNSILQLHCVVKESRGALNSVLQKINELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLEAMLPKYDTRRAKIEQFYFGEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIKMMAQAKQWLGKVKACEGYNIMEEKGCLVLGWKSKPIVAASCWKC* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1021 519 ProSiteProfiles GRAS family profile. 138 518 IPR005202 -
Vvi17g1021 519 Pfam GRAS domain family 147 518 IPR005202 -
Vvi17g1021 519 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 100 513 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1021 Vvi-Chr17 12556745 12558304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1021 139 518 GRAS Transcription Factor Family AT1G14920 37.722 8.25e-82 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi17g1021 GRAS 3e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1021 - - vvi:100263271 965.296