Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1012 ATGGCGACGGCGGTGGTGGCGGAGTCTCGAAAGCTGCCTCGGCCGGGTCGAGGCGGAGTGGTCTCGCATGGTCTCAGTGAAGAAGAGGCTCGAGTCAGAGCCATAGCCGAGATCGTGAACAACATGGTGGAGCTCTCTCACAGGGGCGAAAACGTCGACCTCAACGCCCTCAAATCCGCCGCTTGCCGAAAGTACGGACTCTCCCGCGCCCCCAAACTCGTGGAGATGATCGCGGCGTTGCCCGAGTCAGAACGCGACTCGCTCCTCCCTCGCCTCCGGGCCAAGCCGGTTCGAACCGCCTCAGGAATCGCCGTGGTCGCCGTGATGTCGAAGCCTCACAGGTGTCCACATATCGCAACCACGGGGAATATTTGTGTTTATTGCCCTGGAGGACCTGATTCTGATTTTGAGTACAGTACACAGTCGTACACTGGATACGAGCCCACCAGCATGCGCGCGATTCGTGCTAGATATAACCCATATGTCCAGGCTAGAAGCAGGATCGATCAGCTGAAGCGGCTGGGTCATAGTGTAGACAAGGTAGAGTTCATTTTAATGGGTGGTACCTTCATGTCACTGCCAGCCGAGTACCGTGATTACTTTACAAGGAATCTACATGATGCTTTGTCAGGACACACTTCTGCCAATGTTGAAGAGGCTGTTGCCTACTCAGAGCATAGTGCAATAAAGTGTATTGGAATGACCATTGAAACGAGGCCAGATTACTGTCTTGGACCTCATTTGCGGCAAATGCTTTCTTATGGTTGTACACGGCTGGAGATTGGAGTTCAAAGCACCTACGAGGATGTTGCCCGTGACACTAATAGAGGACATACAGTAGCTGCTGTGGCTGATTGTTTTTGCTTGGCCAAGGATGCTGGTTTCAAGGTTGTTGCTCATATGATGCCTGACCTTCCAAATGTTGGGGTAGAGAGGGACTTGGAAAGTTTCCGGGAGTTTTTTGAAAGCCCTATGTTTAGAGCTGATGGGCTCAAAATATATCCAACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTTTGGAAAACGGGCAGGTATAGGAATTACCCACCTGAGCAACTTGTAGACATTGTAGCAAGAATTCTAGCCATGGTACCCCCTTGGACTCGTGTTTATAGAGTTCAGAGGGATATTCCTATGCCTCTGGTTACTTCTGGGGTTGAGAAAGGAAATCTACGGGAGCTAGCTTTAGCTAGGATGGATGACTTGGGCTTGAAATGCCGTGATGTTCGGACACGTGAAGCTGGAATCCAGGACATCCACCACAAAATTAAGCCAGAGGAGGTTGAGCTTGTTCGCCGTGATTATACAGCAAATGAAGGTTGGGAAACTTTTCTTTCATATGAGGATATACGCCAGGATATTCTTGTTGGGTTGTTGCGCTTGCGCAAATGTGGGCGAAACACTACTTGCCCAGAGCTGATTGGCAGATGTTCAATTGTTCGTGAACTCCATGTTTATGGGACTGCAGTCCCAGTCCATGGACGGGATGCTGACAAGCTTCAACACCAGGGTTATGGTACACTTCTGATGGAGGCGGCAGAACGGATTGCTGGGAGAGAGCACAGATCAACAAAAATAGCAGTTATTTCTGGTGTTGGAACGCGTCATTACTACAGGAAACTGGGGTATGAGCTTGAAGGGCCGTACATGGTGAAATATCTTGTATGA 1692 0.4994 MATAVVAESRKLPRPGRGGVVSHGLSEEEARVRAIAEIVNNMVELSHRGENVDLNALKSAACRKYGLSRAPKLVEMIAALPESERDSLLPRLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPAEYRDYFTRNLHDALSGHTSANVEEAVAYSEHSAIKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPMFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHKIKPEEVELVRRDYTANEGWETFLSYEDIRQDILVGLLRLRKCGRNTTCPELIGRCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEAAERIAGREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLV* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1012 563 ProSiteProfiles Radical SAM core domain profile. 98 388 IPR007197 GO:0003824|GO:0051536
Vvi17g1012 563 SMART MiaB 105 367 IPR006638 GO:0003824|GO:0051536
Vvi17g1012 563 SUPERFAMILY Radical SAM enzymes 135 374 - -
Vvi17g1012 563 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 412 563 IPR000182 GO:0016747
Vvi17g1012 563 Pfam Radical_SAM C-terminal domain 329 407 IPR032432 -
Vvi17g1012 563 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 50 562 IPR034687 -
Vvi17g1012 563 Pfam Acetyltransferase (GNAT) family 415 551 IPR000182 GO:0016747
Vvi17g1012 563 FunFam Elongator complex protein 3 411 563 - -
Vvi17g1012 563 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 371 558 IPR016181 -
Vvi17g1012 563 Gene3D - 414 563 - -
Vvi17g1012 563 CDD Radical_SAM 112 359 - -
Vvi17g1012 563 PIRSF HAT_Elp3 20 563 IPR034687 -
Vvi17g1012 563 MobiDBLite consensus disorder prediction 1 23 - -
Vvi17g1012 563 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 19 562 IPR039661 -
Vvi17g1012 563 Pfam Radical SAM superfamily 123 317 IPR007197 GO:0003824|GO:0051536
Vvi17g1012 563 SFLD elongater protein-like 53 562 - -
Vvi17g1012 563 SFLD ELP3-like 53 562 IPR034687 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vvi17g1012 Radical_SAM 1.9e-18 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1012 K07739 - vvi:100263356 1134.4