Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1010 ATGGGAAGGGCTACAGAAATTGCATCTATTCTTCTCTTGATTTCTCTTTCCCTACAAGGAGCACTTCCAATTTCATCTCTCTCACACACTACCCAGGACTTTGAAGAATCTGCAGCTGCGAGAAATCTCAAACAACAAAAAGATCATGCCCATGAAGTACATTGTTCAAGAGAAAGAAGTAGGGCAGCTTGGAAGATTATTGAGGAGTATATGATGCCGTTTGTGGAGCGAGAGCAGTATCAGATATCAAGTTCATGTAAACTTCATCCTGACAATCACTTATTCAGTGATCAGGAGCAGCATAAGATTCATGTGGATATAAATGAATGGCGCTGTGGATACTGCAAGAAAAGCTTCCGTGCAGAGAAATTTCTTGATCAACATTTTGACAACAGACACTATGGTCTTCTGAATGTTAGTCATAGCAAGTGCTTGGCGGATTTATGTGGGGCGTTGCATTGTGACCTTGTAATGAATTCCAAGACGCCCAAAGCCAAGTGCAATCCTGCAGCTGCAGTGAGGAACCGTCACCTTTGTGAGTCTCTTGCTGATAGCTGTTTTCCTGTTAATCATGGTCTCTCAGCAAGCCGTCTTCATGACATTTTCTTGCGCCAATTCTGTGATGCTCATACTTGCTCAGGAGGAGGAAAACCTTTTTCCAGAGGGGGCATGAAGCAGCCAAGTATTTTCTACCTGGCTATTTCAATCTTGACTCTGATGATGCTTCCTGTGTTCTACGTTATTGTATATCTGTACCAGAGAGAAATGAGAAATGGAACCCAAGAGCTGAAGCGCATCTCACGACATGGGTTGAAAACAAAGCCGTCTTAG 831 0.4308 MGRATEIASILLLISLSLQGALPISSLSHTTQDFEESAAARNLKQQKDHAHEVHCSRERSRAAWKIIEEYMMPFVEREQYQISSSCKLHPDNHLFSDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDNRHYGLLNVSHSKCLADLCGALHCDLVMNSKTPKAKCNPAAAVRNRHLCESLADSCFPVNHGLSASRLHDIFLRQFCDAHTCSGGGKPFSRGGMKQPSIFYLAISILTLMMLPVFYVIVYLYQREMRNGTQELKRISRHGLKTKPS* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1010 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 135 IPR013087 -
Vvi17g1010 276 ProSitePatterns Zinc finger C2H2 type domain signature. 112 133 IPR013087 -
Vvi17g1010 276 PANTHER ZINC FINGER PROTEIN-RELATED 10 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1010 Vvi-Chr17 12367028 12375117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1010 30 276 C2H2 Transcription Factor Family AT5G63280 65.863 2.71e-121 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi17g1010 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1010 - - vvi:100244377 568.155