Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1006 ATGCTCCAAGAAAGAAAAAATAGTTTTGACATCATAATTAGTGATGTTAACATGCCAGATATGGACGGCTTCCAACTCCTGGAACATCTTGAAGTTGAGATGGATCTCCCTGTCATTTTGATATCTGTTGATGGGGAAATGAATAGAGTTATGAAAGGCGTCCAAAGTGGAGCTTGCGATTATCTTCTCAAGCCTGTTCGAATGGAAGAGCTTAAGAATATATGGCAGCATGTCTTGAGAAAGAAAATACATGAGGGAAAAAACTCACAGGTGATGATAAGTAGATCATCAAATGAGTTGGATGATGGGCAGCAACTAAATGGAGGTGAGGTGAGTGCAACTAGAAAACGAAAAGATATGGAAAACAGAAGGCATGATGACCAAAAGTCAGTTGAGCCATCAACATCAAAGAAAGCCAGAGTGGTTTGGTCCATAGATCTACATCAGAAGTTTGTGGACGTTGTAACCCAGATTGGCTATGATAAAGCCAGGCCCAAGAAAATTCTGGACTTGATGAATGTTCCCTGGTTGACAAGAGAAAATGTTGCTAGTCATCTGCAGAAGTACAGGTTCTACCTGAGTAAGTTGCGGAAGGAGAACAAAGTAAAAAGTTCTCAAGGGATGATGCAGCAGGATTTCACCCGTCCTGCTGGAAGTTTTGGCTTTCAAACCTCAAATCTGATGCACCAAAAACATGCAGCTAATGGCAATCCCAAATACACAGGCAACAATATGCCTCTCATAGACAAGGGCACAAGATTCTGCCATGAAGCTGATAAGAAGGCTACAGCTTCCATTTTGCCTGTGGATCTCAAAGAAACTTCAGCAAGTAATTTCCTTGACTGTCAGAGAGCAAATGTTAGTTCTCAAACCATTCTTTCCCATCCTTTCAACCACCAATCAAGTCAGTCAAATACGACCACCCAGACGTGGAATGAAGTCCTAATGGAGCAACAATTCAAACAGCCTCCAAATCAAGATCCTGAGCTGTATGTTCTGCTAGATGATGACTTTAGCCATGCACTGCTGTCTGCTCCACAACATCTTCTCCAAGTTGATCTCCAATGTTCTGCTAATGCTGTTGGTCCGGGAACTTCAGTTCCAGAAAGAGATAAGCCCGGCTCTGTCATGATCATACCTCTGTGCTCGCAATCCAGAAGTGATCATGGCCAGATTGTAGATCCAGAGACCTCAGATGCCATCCCCAGCTTCAAAGTTGGCATGAAAAATCAGGTGGTCAATCTGAATTGCTTGAACGACTGA 1263 0.4276 MLQERKNSFDIIISDVNMPDMDGFQLLEHLEVEMDLPVILISVDGEMNRVMKGVQSGACDYLLKPVRMEELKNIWQHVLRKKIHEGKNSQVMISRSSNELDDGQQLNGGEVSATRKRKDMENRRHDDQKSVEPSTSKKARVVWSIDLHQKFVDVVTQIGYDKARPKKILDLMNVPWLTRENVASHLQKYRFYLSKLRKENKVKSSQGMMQQDFTRPAGSFGFQTSNLMHQKHAANGNPKYTGNNMPLIDKGTRFCHEADKKATASILPVDLKETSASNFLDCQRANVSSQTILSHPFNHQSSQSNTTTQTWNEVLMEQQFKQPPNQDPELYVLLDDDFSHALLSAPQHLLQVDLQCSANAVGPGTSVPERDKPGSVMIIPLCSQSRSDHGQIVDPETSDAIPSFKVGMKNQVVNLNCLND* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1006 420 SUPERFAMILY Homeodomain-like 135 195 IPR009057 -
Vvi17g1006 420 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 283 IPR045279 GO:0009736
Vvi17g1006 420 NCBIfam myb-like DNA-binding domain, SHAQKYF class 138 190 IPR006447 GO:0003677
Vvi17g1006 420 Gene3D - 134 197 - -
Vvi17g1006 420 Pfam Response regulator receiver domain 5 73 IPR001789 GO:0000160
Vvi17g1006 420 MobiDBLite consensus disorder prediction 96 111 - -
Vvi17g1006 420 ProSiteProfiles Response regulatory domain profile. 1 79 IPR001789 GO:0000160
Vvi17g1006 420 CDD REC_typeB_ARR-like 1 79 - -
Vvi17g1006 420 Gene3D - 1 97 - -
Vvi17g1006 420 MobiDBLite consensus disorder prediction 96 135 - -
Vvi17g1006 420 FunFam Two-component response regulator 134 197 - -
Vvi17g1006 420 MobiDBLite consensus disorder prediction 112 134 - -
Vvi17g1006 420 Pfam Myb-like DNA-binding domain 140 190 IPR001005 -
Vvi17g1006 420 SUPERFAMILY CheY-like 5 92 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1006 Vvi-Chr17 12285890 12287854 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1006 1 221 Response Regulator Gene Family AT3G16857 49.798 1.81e-65 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vvi17g1006 Response_reg 5.8e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1006 - K14491 vvi:109121447 835.484