Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1005 ATGGAAAGTGGGTTTTGTTCACCAAGAACTGAAGCATTCCCAGCTGGTCTTCGTGTACTTGTTGTTGACGATGACCCAACGTGGCTCAAAATCCTTGAAAAAATGCTCAAGAAGTGTTCTTATGAAGTGACAACTTGCTGTTTAGCAAGAGATGCTCTGAACATGCTTCGGGAGAGAAAAGATGGTTTTGACATCGTGATTAGTGATGTTAACATGCCAGACATGGATGGCTTCAAACTCCTGGAACATGTCGGTCTAGAGATGGATCTCCCTGTAATTATGATGTCTGTCGATGGGGAAACAAGTAGAGTGATGAAAGGCGTTCAGCATGGAGCTTGCGATTATCTTCTCAAGCCTGTTCGGATGAAAGAGCTTAAGAATATATGGCAACATGTCTTTAGGAAGAAAATACATGAGGGAAAAGACGTTGAAAGCTATGAATGTATGCGTGAAATTCAGATGATAATGAGTAGATCAGATGAGTTTGATGATGGGCACCAATTAAATGGAGGTGAGCTGGGTGCAACTAGAAAACGAAAAGATATGGAAAACAGGAGGCATGATGATCAAGAGTTGGTTGATCCATCATCATCAAAGAAGGCTAGAGTGGTTTGGTCCATAGATCTACATCAGAAGTTTGTGGATGCTGTAAACCAGATTGGCTTTGATATTGGTCCCAAGAAAATTCTGGACTTGATGAATGTTCCTTGGCTGACAAGAGAAAACGTTGCCAGCCATCTGCAGAAGTACCGGCTCTACCTAAGTAGGTTGCAGAAGGAGAATGAACTAAAAACTTCTGAAGGGATGAAGCAGCAAGATTTCACTTGTCCTGCTGGAAGTTTAGGCTTTCAAACCTCTACTCTGATTCACCCAAAAGATGCAGCTAACTGCGATCTCAAATACACAGGCAACAATATGCTTCTCATAGACATGGGCACAAGAATCTGTCGTGAAGCTGATAAGAAAGGTACAGTTTCGATTTTGCCCATGGATCTCAAAGAAACTTCAACAAGTAATTTCCTTGACAGTCAGAGGGCAAATGTTAGTTCTCAAACCATTCTTTCCCGTCCTTTCAACTACCAATCAAGTCAGTCAAATACGACCAGCCAGAAGTGGAATGAAGCCCCAATGGAGCAATTCAAACAGCCGCCAAAACAAGAGCCTGAGCCGTATGCTCTACTAGAAGATGACTTTAGCCATGCACTGCAGTCTGCTCCACAGCATCTTGTCCAAGTTGATCTCCAATGTTCTGCTTATTCTGTTGGTCCAGGAACTGCAGTCCCAGAAAGAGATAAGCCCGGCTCTGTAATGATCACGCCTGTGCGCTCTCAATCCAGAAGCAACCATAGCCAGATTGTAAATCCAGAGACCTCAGATGCCATCTCCAACTTCAAAGTTGGCATGAAGAATCAGATGGTTGGTCTGAATTGCTTGAACGACTGTGAACCCATCCAACAAAAGATATTTACAGTAGGTGATTCCTCCTTGGGTTCTCAAGTCGGATGTGCTTATACCGAGAGTATTGGGCTCCAGGACATAGACCTTTTGGACTACTACAATTCAGAACTTATTGATGAACTGGAGACAAGCTACTATGCTGACTTGGGGTTAAACTGGGACAATGATTGTGATTCAGTTCAAAATCCTTTTGTAGATCAAAGTTTATTCACGGCACGAGCCGAGGCTTCAGGGGTTTGCTACCCTGGTTAG 1710 0.4327 MESGFCSPRTEAFPAGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLARDALNMLRERKDGFDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPVRMKELKNIWQHVFRKKIHEGKDVESYECMREIQMIMSRSDEFDDGHQLNGGELGATRKRKDMENRRHDDQELVDPSSSKKARVVWSIDLHQKFVDAVNQIGFDIGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENELKTSEGMKQQDFTCPAGSLGFQTSTLIHPKDAANCDLKYTGNNMLLIDMGTRICREADKKGTVSILPMDLKETSTSNFLDSQRANVSSQTILSRPFNYQSSQSNTTSQKWNEAPMEQFKQPPKQEPEPYALLEDDFSHALQSAPQHLVQVDLQCSAYSVGPGTAVPERDKPGSVMITPVRSQSRSNHSQIVNPETSDAISNFKVGMKNQMVGLNCLNDCEPIQQKIFTVGDSSLGSQVGCAYTESIGLQDIDLLDYYNSELIDELETSYYADLGLNWDNDCDSVQNPFVDQSLFTARAEASGVCYPG* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1005 569 Gene3D - 201 258 - -
Vvi17g1005 569 FunFam Two-component response regulator 196 258 - -
Vvi17g1005 569 Pfam Myb-like DNA-binding domain 202 251 IPR001005 -
Vvi17g1005 569 CDD REC_typeB_ARR-like 19 133 - -
Vvi17g1005 569 MobiDBLite consensus disorder prediction 166 195 - -
Vvi17g1005 569 Pfam Response regulator receiver domain 19 127 IPR001789 GO:0000160
Vvi17g1005 569 Gene3D - 17 200 - -
Vvi17g1005 569 SMART REC_2 17 129 IPR001789 GO:0000160
Vvi17g1005 569 SUPERFAMILY Homeodomain-like 198 256 IPR009057 -
Vvi17g1005 569 SUPERFAMILY CheY-like 16 143 IPR011006 -
Vvi17g1005 569 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 252 IPR006447 GO:0003677
Vvi17g1005 569 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 361 IPR045279 GO:0009736
Vvi17g1005 569 MobiDBLite consensus disorder prediction 359 376 - -
Vvi17g1005 569 MobiDBLite consensus disorder prediction 359 386 - -
Vvi17g1005 569 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Vvi17g1005 569 FunFam Two-component response regulator 17 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1005 Vvi-Chr17 12269629 12273319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1005 11 257 Response Regulator Gene Family AT2G25180 56.800 6.53e-81 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vvi17g1005 Response_reg 3.3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1005 - K14491 vvi:100250227 1126.31