Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1003 ATGGATTGCAAGGAAGAAGCATGCTTGGAGTGCACCAAACAATGTTTACTACTTCACAAAAAGAAGAAACGTCCTATTCCCAATATTTCATCTTTTTTCAAAGTCATGATTGGCGATAAATTCTCAGAAATTCTGTTCTTGCCCCCTAAATTTGCACGTACAGTGTCAGCATTGGTGGATGAAAAAACCCATCTTGAGGATTCGAGTGGGCGGCAATGGGAAATAACGGTATCTAATCTTAATGGCTCACTTGCTTTTCATCAAGGATGGCATGCTTTTGCACTAGATCATCGCCTAGAAATTGGAGATTTTGTGGTATTCCATTATATTATGGGATCGCATTTTATCACTCAGATATATGATAGAACTGGATGTGAAAAACCGAAATATTCTGAGAATGGTCAACATAAGAAAATAACGAGGAATAAAAGAAGTCCAATTTCTAAAGATCGTGCATTCCGCACAATTGATAAAGGTTCGATAAATGAACAGGTTTCAAGCACTTCTGTTCTTTCTGGGTCAGATATTGGAATAATCCAAAGTCAGTGTGATGCAACTGATGTGGAAAAAGTACCAATGATTGTAGAGAACACTTCGAATTGTAAGAATAGCAATGGAAAGCTCAAGTCGGTTTGCAAAGCAGAGTATGTTGAAGAACCATACTACATAATTGACAGAGATTTGGGATACAAACGAGGAGAATACAGAAGCTCTATATTTGACTTGTCAAACTTTGAAATGCAGAATAATGAATTTGGTGCTGATGGAAGCAAGAAAATTGTAGCTGGAGTTGAAAAATCCCCTCATCATGCTGATAAATTACTCATATCACAAACTGAAGCAATGGTAGCTGATGTATATACAGTGGCTGAAGAGGTAGGGAGAAAAGTGGTGGCTTCAGATGCATCTAAATTTGAAACAGGGAAAAAAAAGGACTCTGATGTGGTGGAAAAAATAATATTGAGGCACAATAAAGATTCTTGTGATAACAAGGTGTCTGGGCAATTTTTGACCACATCTGCTGAGGAACCTGGGGAGAATGGAAAAGATAGTTCAGACTTGGGAAATGAAGGCATCAAAGAACACCAGATGGCTGAGATGAAGATCATCAATACACATTCAATTGATATGAAGGGTCTCAAAAAAGAATGTGTGGAGATGACTTCAAAAATGCATGGTCTTGAGGAGATGATTGGAGAAAGGGCACTGGAGTTGATGAAAGGGTTGCACCATCACAGTTGGAATCCAACTAGAAAAGATAATGATGAAGTCTACGAAGTGGTGAAAACTGAAGCTGTTGATTTTATTGGTTCACCCCTGCCAATTGCAGCCAACCTGTCCTGTATTGTGGGGACAGACGACCGATCCTTTCTTGAGCTGCCAGCAAGCTTGCCCTCATTTTCATACAGGGGAAGAACAAAAATGGAAAGGAAGGTAGTGGTTCTTCAGGATCCAGATAAGAAATCATGGCCGGTGCTCTACCATGAGAGACAGGGTTTCAAAGCTTTGACGAGTGGGTGGGAAGACTTTAGCCGGGCAAATAACATTCAGCCAGGAGATGAGTGTGTTTTCACGCTGGAAAACGAACTCAAGGGCATATATGCAGTCCGCATTGTCCAAAAGTAA 1626 0.4004 MDCKEEACLECTKQCLLLHKKKKRPIPNISSFFKVMIGDKFSEILFLPPKFARTVSALVDEKTHLEDSSGRQWEITVSNLNGSLAFHQGWHAFALDHRLEIGDFVVFHYIMGSHFITQIYDRTGCEKPKYSENGQHKKITRNKRSPISKDRAFRTIDKGSINEQVSSTSVLSGSDIGIIQSQCDATDVEKVPMIVENTSNCKNSNGKLKSVCKAEYVEEPYYIIDRDLGYKRGEYRSSIFDLSNFEMQNNEFGADGSKKIVAGVEKSPHHADKLLISQTEAMVADVYTVAEEVGRKVVASDASKFETGKKKDSDVVEKIILRHNKDSCDNKVSGQFLTTSAEEPGENGKDSSDLGNEGIKEHQMAEMKIINTHSIDMKGLKKECVEMTSKMHGLEEMIGERALELMKGLHHHSWNPTRKDNDEVYEVVKTEAVDFIGSPLPIAANLSCIVGTDDRSFLELPASLPSFSYRGRTKMERKVVVLQDPDKKSWPVLYHERQGFKALTSGWEDFSRANNIQPGDECVFTLENELKGIYAVRIVQK* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1003 541 PANTHER B3 DOMAIN-CONTAINING 30 527 - -
Vvi17g1003 541 SUPERFAMILY DNA-binding pseudobarrel domain 465 530 IPR015300 -
Vvi17g1003 541 Coils Coil 377 397 - -
Vvi17g1003 541 SMART B3_2 449 539 IPR003340 GO:0003677
Vvi17g1003 541 SMART B3_2 32 123 IPR003340 GO:0003677
Vvi17g1003 541 CDD B3_DNA 476 538 IPR003340 GO:0003677
Vvi17g1003 541 Gene3D - 446 541 IPR015300 -
Vvi17g1003 541 Gene3D - 27 125 IPR015300 -
Vvi17g1003 541 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
Vvi17g1003 541 SUPERFAMILY DNA-binding pseudobarrel domain 28 125 IPR015300 -
Vvi17g1003 541 ProSiteProfiles B3 DNA-binding domain profile. 443 541 IPR003340 GO:0003677
Vvi17g1003 541 CDD B3_DNA 31 121 IPR003340 GO:0003677
Vvi17g1003 541 Pfam B3 DNA binding domain 470 538 IPR003340 GO:0003677
Vvi17g1003 541 Pfam B3 DNA binding domain 32 122 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1003 32 127 B3 DNA Binding Superfamily AT5G66980 34.000 5.21e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi17g1003 B3 8.9e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1003 - - vvi:104882266 1095.49