Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0992 ATGGACGGCTCTGAAAACACCGTTTCAATTCCCAATGAAGATGAGTTAGGGTTAGGGCTCCGGCCTTCGTCTCCTGCCCAGCCTGATGTTGAGAAGCTCAACCAGGAATTCCTGTCTCTAGTGTTGGAGCAACACGAGCCTGTTGTTGAATCTCTCGCTTTGGAGCAACATGAGCCTGTTGTTGAATCTCTCGCTTTGGAGCAACATGAGCCTGTTGTTGAATCTCTCGCTTTGGAGGAGAGGGAGGAGGAGAAGGAGGAGGATGAGGAGAGTGATTCCAACGGTGAGGTGAAAGCAAGTGATGATGAGGAGGAGCAGTGCGAGAATCTTGAGGACGAATCGGCGGCCAAGGATGACAAGAGTGCCAGGTTTCAGTATCCGGTGAGGCCGGATGCGGTGGACTGTTCCTTTTATCTTCGGACTGGGACGTGTAAGTTTGGATCCAATTGCAAGTTCAATCACCCGATTAGAAGGAAGAACCAGGTTGCTAAGGAGAAGGTGAAGGAAAAGGAAAAGGAAGAATTTCCAGAAAGGCCAGGGCAAACAGAATGCAAGTATTACCTGAGGACAGGGGGATGTAAGTTTGGAAAAGCTTGTAGATATAATCACACGAAGGCTAAACCTTCTGCAGTTCCAGTTCTAGAGCTCAACTTTCTTGGCCTGCCAATCCGAATGGGAGAGAAAGAGTGTCCCTACTACATGCGGACTGGCTCATGCAAGTATGGAGCAAACTGCAGGTTTAATCATCCTGATCCTACAGCTGCAGGGGGATATGAATCTCCTTCAGGATATGGAAATGGGGGATCTGTTCCATTACAAGGTGCATCACAATCAAATATGGCATCTTGGTCTTCACCAAGAGCATTGAATGAGCCTGCTCCATTTGTGCCTATTATGTTTTCACCAACTCAAGGTGTTCCTCCCCCAAATCCTGAATGGAATGGATATCAGGCTCCTCTGTATCCACCACCACCACCAGAAAGGAGTATGCATCCCCCTCCAGCATTTGTTATAAACAATACAGCAACGGATGCCAATGTATATGGTCATCATCAACAGCAACAGCAATCGCTTATTGAAGACTTTCCAGAACGGCCTGGTCAACCTGAATGCTCTTACTTCTTAAAGACTGGGGACTGCAAATTTAGGGCTGCATGCAAATATCACCATCCAAAGAATCGAATTCCAAAGTCACCTCCATGCACCCTCAGCGACAAGGGTCTGCCATTAAGACCAGATCAGAATATCTGCACCCACTACAACCGCTATGGCATTTGCAAGTTCGGACCTGCCTGTAAATTTGACCATCCAGTAAATTATGGCAACTCGGCCTCGGCCCCTTCAGCTGAGTCTGGCCAAGACCAGCCCCCTCCTTTTGGGGGCTCTGTCACTGCTGATGGGGTCAGACCTGGCAGTGGGAACGGAAACGAGATTCTAATCCAGCAGCCTGTCTAA 1455 0.4852 MDGSENTVSIPNEDELGLGLRPSSPAQPDVEKLNQEFLSLVLEQHEPVVESLALEQHEPVVESLALEQHEPVVESLALEEREEEKEEDEESDSNGEVKASDDEEEQCENLEDESAAKDDKSARFQYPVRPDAVDCSFYLRTGTCKFGSNCKFNHPIRRKNQVAKEKVKEKEKEEFPERPGQTECKYYLRTGGCKFGKACRYNHTKAKPSAVPVLELNFLGLPIRMGEKECPYYMRTGSCKYGANCRFNHPDPTAAGGYESPSGYGNGGSVPLQGASQSNMASWSSPRALNEPAPFVPIMFSPTQGVPPPNPEWNGYQAPLYPPPPPERSMHPPPAFVINNTATDANVYGHHQQQQQSLIEDFPERPGQPECSYFLKTGDCKFRAACKYHHPKNRIPKSPPCTLSDKGLPLRPDQNICTHYNRYGICKFGPACKFDHPVNYGNSASAPSAESGQDQPPPFGGSVTADGVRPGSGNGNEILIQQPV* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0992 484 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Vvi17g0992 484 ProSiteProfiles Zinc finger C3H1-type profile. 365 393 IPR000571 GO:0046872
Vvi17g0992 484 SUPERFAMILY CCCH zinc finger 181 205 IPR036855 GO:0046872
Vvi17g0992 484 Gene3D - 90 167 - -
Vvi17g0992 484 MobiDBLite consensus disorder prediction 265 286 - -
Vvi17g0992 484 Coils Coil 100 120 - -
Vvi17g0992 484 MobiDBLite consensus disorder prediction 80 112 - -
Vvi17g0992 484 SUPERFAMILY CCCH zinc finger 409 437 IPR036855 GO:0046872
Vvi17g0992 484 SUPERFAMILY CCCH zinc finger 223 251 IPR036855 GO:0046872
Vvi17g0992 484 SMART c3hfinal6 365 392 IPR000571 GO:0046872
Vvi17g0992 484 SMART c3hfinal6 226 251 IPR000571 GO:0046872
Vvi17g0992 484 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Vvi17g0992 484 SMART c3hfinal6 178 205 IPR000571 GO:0046872
Vvi17g0992 484 SMART c3hfinal6 411 438 IPR000571 GO:0046872
Vvi17g0992 484 MobiDBLite consensus disorder prediction 444 458 - -
Vvi17g0992 484 MobiDBLite consensus disorder prediction 444 484 - -
Vvi17g0992 484 MobiDBLite consensus disorder prediction 1 31 - -
Vvi17g0992 484 Gene3D - 331 402 - -
Vvi17g0992 484 Gene3D - 411 458 - -
Vvi17g0992 484 ProSiteProfiles Zinc finger C3H1-type profile. 178 206 IPR000571 GO:0046872
Vvi17g0992 484 MobiDBLite consensus disorder prediction 266 286 - -
Vvi17g0992 484 Gene3D - 168 255 - -
Vvi17g0992 484 ProSiteProfiles Zinc finger C3H1-type profile. 411 439 IPR000571 GO:0046872
Vvi17g0992 484 PANTHER PROTEIN PHOSPHATASE RELATED 63 452 - -
Vvi17g0992 484 SUPERFAMILY CCCH zinc finger 130 157 IPR036855 GO:0046872
Vvi17g0992 484 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Vvi17g0992 484 MobiDBLite consensus disorder prediction 63 123 - -
Vvi17g0992 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 367 392 IPR000571 GO:0046872
Vvi17g0992 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 226 250 IPR000571 GO:0046872
Vvi17g0992 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 180 203 IPR000571 GO:0046872
Vvi17g0992 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 414 437 IPR000571 GO:0046872
Vvi17g0992 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 155 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0992 Vvi-Chr17 11994054 12000695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0992 110 445 C2H2 Transcription Factor Family AT3G02830 39.045 4.84e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi17g0992 zf-CCCH 1.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0992 - - vvi:100263823 960.288