Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0991 ATGGCGTCAACGACAGTAGCAGCTGAGCCAAATCCAGAAGTGTTTTCATGGTTGAAAACCCTGCCTCTGGCTCCAGAGTACCACCCAACCCTAGCCGAGTTTCAAGATCCTATCTCCTACATTTTCAAGATCGAGAAAGAGGCCTCCAGGTATGGAATCTGCAAAATCGTGCCTCCGGTACCTCCGCCGCCGAAGAAGACTGCAATTGCAAACCTGACCCGCTCTCTGGCGAATCGTGCTGCGAGCTCCAACCCTAAATCCGCTCCCACATTCACCACTCGGCAGCAGCAGGTCGGGTTCTGCCCCCGGAAGCCCCGGCCGGTGAAGAAACCGGTGTGGCAGAGCGGCGAATACTACACATTTCAGGAATTTGAGGCCAAAGCTAGGGCGTTCGAGAAGAATTACTTGAAGAAGAGCTCAAAAAAGCCACTTTCGGCTCTGGAAATCGAAACCCTTTTCTGGAAGGCTTCTGTGGACAAACCCTTTTCCGTTGAATATGCAAATGACATGCCTGGTTCGGCGTTTGTGCCGGTTAGTTCTAAGAAGTGGCGCGAAGCAGGGGAGGCAGTGACTGTAGGTGAGACTGCGTGGAATATGAGGGGGATTTCTAGGGCAAAGGGGTCATTATTGAGGTTCATGAAGGAGGAGATACCAGGAGTCACTTCACCTATGGTGTATGTTGCAATGATGTTCAGCTGGTTTGCTTGGCATGTGGAGGATCATGATTTGCACAGTTTGAACTATTTGCATATGGGAGCAGGAAAGACATGGTATGGTGTGCCTAGGGAAGCTGCAGTTGCTTTTGAGGAAGTGGTTAGGGTTCATGGTTATGGAGGAGAGATCAATCCTCTGGTCACTTTTGCAGTACTTGGTGAGAAGACCACTGTCATGTCACCTGAAGTATTTGTTAGTGCAGGGATTCCATGCTGCAGGTTGGTACAAAACCCTGGAGAGTTCGTTGTCACTTTCCCAAGAGCCTACCATTCAGGCTTCAGCCATGGGTTTAATTGTGGGGAGGCAGCAAATATTGCCACTCCTGAATGGTTGAGGGTTGCAAAAGATGCTGCAATTCGTAGAGCTTCAATCAATTATCCTCCCATGGTGTCTCATTTCCAGTTGCTTTATGATCTTGCATTAGCATTATGTTCAAGGATCCCCATGAGCATAAGTGTTGAACCACGGAGTTCTCGACTCAAGGATAAGAAGAGGGGTGAAGGAGAAACAGTGGTCAAGGAGCTGTTTGTGCAGAATATAATGCAAAACAATGACCTGCTTCATATTCTTGGAAAGGGGTCCTCAATTGTACTTCTTCCCAAAAGATCTTCTGATATCTCTGTTTGCCCAAATTTACGTGTTGGATCTTCATCAAGGGTAAAACCTAGGTTATCCCTTGGTTTATGCAATCTGGAGGAAGCAATGAAAACCTCAAAAAGTATAGTATCTGATGATAGTGATATGGGAATGAATCATGACTTTGAGCACTTGAGGGGTTTCTATTCAGTGAAAGGAAAATTTGCTTCTTCATGTGATAGGGACAAGCTCCATTTATCACATGGAAATGATAATGGCAGTGCTTTGACTTCTCAGACACAAAACATGGAGACTAAAATTGAAAGTATCTCTCATGGGGATGGGTTGTCAGATCAAGCATTATTTTCATGTGTCACATGTGGGATTTTGAGTTTTGCTTGCGTTGCTTTAATTCAACCAAGAGAAGCAGCAGCAAGATACCTAATGTCAGCTGATTGTAGCTTCTTTAACGATTGGATTGTTGGTTCTGGTCCTTCTGGAGTGGCAAATGAGGATTTCACTGGTGTCAGTGGGGATGTGCACAATTCTGAGCTGAATTCCTGTTCAGGATGGATGAGAAAGCGGGTTCCAAATGCTTTATTTGATGTCCCTATTCAGTCTGCTAATTATCAGATTCAAACGGTAGATCAAAATAATGAAGTGGTTTCAAATACTGGAACACAGAAAAACACTTCTGCTCTTGGTCTATTAGCCTTAACTTATGCCAATTCGTCTGATTCCGAGGAAGATCAGCTTGAGCCAGATATTCCTTTGGAAGCAGATAATCTTGCTTCTACTGAATCAAATAGTTCAGAAGGTATATTTAGAGATCCATTAGCCATATCATGGGCCACTTCCAAATATTCCCCAGTTGGCCATGATGCTGAAAGAGCAAAGTTTAGCAATGCCATTGTCCCAGTAGAGAATACAAACATGTCATTTGCTCCAAGATCTGATGAAGATTATTCTAGAATTCATGTCTTCTGTCTTGAGCATGCTGTAGAAGTAGAGCAGCAACTTCGTCCAATAGGTGGAGTGAATATGTTGCTACTTTGCCATCCAGATTATCCCAAGGTGGAGGCTGAAGCAAAATTAGTGGCAGAAGATCTTGGAATAGATTATCTCTGGAATGATTTTGTGTACAGAGATGCAACTAAAGAGGATGGTGAGATGATTCAATCAGCTTTGGATAGTGAGGAATGCATACCTGGAAATGGCGACTGGGCTGTAAAGCTGGGTGTCAATCTCTATTACAGTGCTAATCTGAGCCGCTCTCCTCTCTATATTAAGCAGATGCCATACAACTCTGTTATATACAATGTATTTGGGCGCAGTTCGGCTAACTCACCCACAGCACCTGATGTTTATGGGAGAGGGCCTGGCAAGCAGAAAAAGATTGTAGTGGCAGGGAAATGGTGTGGGAAAGTTTGGATGTCAAATCAAGTTCATCCCCTTCTAGCACAAAAGGATCCTGAAGAACAAGAGGAAGATAGGAACTTCCATGTTTGGGTAAAAAAGCCTGATGAGAAGCCTGAGAGAAAATCAGAAAGTAGCCGGAAAGCTGAAACAAGCTCTGCACCCAGAAAGTCTGGTAGGAAGAGGAAAATGATGGTAGAGAATGGATCAACTAAGAAAGCCAATCGTCCAGAGAGAGAAGATCCGGTTAGTGATTCAGATGATGCACCAGATGATAATTCTCATCAGCAGCGGACAAGGATTCTTAGAAGCAAGCAAGTGAAACAAGAGACTCCTCGGCGTCGGAACAGTTGTGAGCAAAGCGCCAGAGAGTTTGATTCTTATGTTGAAGATGAGCTGGAAGGTGGACCAAGCACACGCCTCCGGAGGAGAAACCCAAAACCTCCCAAAGAGTTGGAAGCCAAACCAGTAGTAAAGAAGCAAACAGGTAGGAGAAAGGTGAAGAAAACTCCTGTCCTGAAGGCTCCAGCTAGCTTTAAGATGAGGGAGGAGGAAGAATACCAAAGTGACTCAGAGGTAGGTGCCAAGAACATATCAGCTAGGAAAAAGGCAAAGAAAGCTCCAGCAGCCAAGGCACCAGGCAACCACAACAATGCAAAGATACAAGATGAGGAAGAAGAGTACCAGTGTGACATGGAAGGATGCACCATGAGTTTCAGCTCGAAGCCAGAGCTGGCATTGCATAAAAAGAACATCTGTCCAGTGAAGGGGTGTGGAAAGAAGTTCTTCTCGCACAAATACTTAGTGCAGCATCGGCGAGTCCACATCGATGATCGTCCCCTCAAGTGTCCCTGGAAGGGCTGCAAGATGACATTCAAGTGGGCGTGGGCTAGGACAGAGCACATCAGGGTTCACACAGGTGCCCGGCCTTACATTTGCACCGAGGCAGGCTGTGGGCAAACGTTCAGATTTGTATCCGACTTCAGTCGTCACAAGCGGAAGACTGGTCATTCTGCAAAGAAGGCCAGAGGATAA 3741 0.4552 MASTTVAAEPNPEVFSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASRYGICKIVPPVPPPPKKTAIANLTRSLANRAASSNPKSAPTFTTRQQQVGFCPRKPRPVKKPVWQSGEYYTFQEFEAKARAFEKNYLKKSSKKPLSALEIETLFWKASVDKPFSVEYANDMPGSAFVPVSSKKWREAGEAVTVGETAWNMRGISRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPREAAVAFEEVVRVHGYGGEINPLVTFAVLGEKTTVMSPEVFVSAGIPCCRLVQNPGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPMSISVEPRSSRLKDKKRGEGETVVKELFVQNIMQNNDLLHILGKGSSIVLLPKRSSDISVCPNLRVGSSSRVKPRLSLGLCNLEEAMKTSKSIVSDDSDMGMNHDFEHLRGFYSVKGKFASSCDRDKLHLSHGNDNGSALTSQTQNMETKIESISHGDGLSDQALFSCVTCGILSFACVALIQPREAAARYLMSADCSFFNDWIVGSGPSGVANEDFTGVSGDVHNSELNSCSGWMRKRVPNALFDVPIQSANYQIQTVDQNNEVVSNTGTQKNTSALGLLALTYANSSDSEEDQLEPDIPLEADNLASTESNSSEGIFRDPLAISWATSKYSPVGHDAERAKFSNAIVPVENTNMSFAPRSDEDYSRIHVFCLEHAVEVEQQLRPIGGVNMLLLCHPDYPKVEAEAKLVAEDLGIDYLWNDFVYRDATKEDGEMIQSALDSEECIPGNGDWAVKLGVNLYYSANLSRSPLYIKQMPYNSVIYNVFGRSSANSPTAPDVYGRGPGKQKKIVVAGKWCGKVWMSNQVHPLLAQKDPEEQEEDRNFHVWVKKPDEKPERKSESSRKAETSSAPRKSGRKRKMMVENGSTKKANRPEREDPVSDSDDAPDDNSHQQRTRILRSKQVKQETPRRRNSCEQSAREFDSYVEDELEGGPSTRLRRRNPKPPKELEAKPVVKKQTGRRKVKKTPVLKAPASFKMREEEEYQSDSEVGAKNISARKKAKKAPAAKAPGNHNNAKIQDEEEEYQCDMEGCTMSFSSKPELALHKKNICPVKGCGKKFFSHKYLVQHRRVHIDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYICTEAGCGQTFRFVSDFSRHKRKTGHSAKKARG* 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0991 1246 ProSiteProfiles JmjC domain profile. 194 360 IPR003347 -
Vvi17g0991 1246 PANTHER LYSINE-SPECIFIC DEMETHYLASE 16 1178 - -
Vvi17g0991 1246 SUPERFAMILY Clavaminate synthase-like 205 374 - -
Vvi17g0991 1246 FunFam Probable lysine-specific demethylase ELF6 1180 1209 - -
Vvi17g0991 1246 ProSitePatterns Zinc finger C2H2 type domain signature. 1215 1239 IPR013087 -
Vvi17g0991 1246 ProSiteProfiles JmjN domain profile. 24 65 IPR003349 -
Vvi17g0991 1246 MobiDBLite consensus disorder prediction 918 1062 - -
Vvi17g0991 1246 FunFam Probable lysine-specific demethylase ELF6 17 364 - -
Vvi17g0991 1246 Pfam jmjN domain 25 58 IPR003349 -
Vvi17g0991 1246 Gene3D Cupin 17 364 - -
Vvi17g0991 1246 MobiDBLite consensus disorder prediction 917 1071 - -
Vvi17g0991 1246 Gene3D Classic Zinc Finger 1150 1237 - -
Vvi17g0991 1246 ProSiteProfiles Zinc finger C2H2 type domain profile. 1183 1212 IPR013087 -
Vvi17g0991 1246 SMART JmjN_1 23 64 IPR003349 -
Vvi17g0991 1246 SUPERFAMILY beta-beta-alpha zinc fingers 1169 1211 IPR036236 -
Vvi17g0991 1246 SMART cupin_9 191 360 IPR003347 -
Vvi17g0991 1246 ProSitePatterns Zinc finger C2H2 type domain signature. 1155 1177 IPR013087 -
Vvi17g0991 1246 ProSiteProfiles Zinc finger C2H2 type domain profile. 1213 1244 IPR013087 -
Vvi17g0991 1246 ProSiteProfiles Zinc finger C2H2 type domain profile. 1153 1182 IPR013087 -
Vvi17g0991 1246 SUPERFAMILY beta-beta-alpha zinc fingers 1201 1235 IPR036236 -
Vvi17g0991 1246 ProSitePatterns Zinc finger C2H2 type domain signature. 1185 1207 IPR013087 -
Vvi17g0991 1246 Pfam JmjC domain, hydroxylase 224 342 IPR003347 -
Vvi17g0991 1246 SMART c2h2final6 1213 1239 IPR013087 -
Vvi17g0991 1246 SMART c2h2final6 1130 1152 IPR013087 -
Vvi17g0991 1246 SMART c2h2final6 1153 1177 IPR013087 -
Vvi17g0991 1246 SMART c2h2final6 1183 1207 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0991 Vvi-Chr17 11979123 11992975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0991 1026 1244 C2H2 Transcription Factor Family AT3G48430 57.727 2.33e-67 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi17g0991 JmjC 1.6e-37 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0991 - - sly:101257458 1371.68