Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0988 ATGGAGCTTGTGGAGAAAAGAGTGAGGAATGCTAAAATGGGCAAGAACACTATTCATGATGTTGTTCTCGTTGGCAGATCCACTAGAATTCCCAAGGTACAACAACTAATGCAAGATTTTCTTAAATAG 129 0.3876 MELVEKRVRNAKMGKNTIHDVVLVGRSTRIPKVQQLMQDFLK* 43
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0988 42 Gene3D - 1 42 - -
Vvi17g0988 42 Pfam Hsp70 protein 2 41 IPR013126 GO:0005524|GO:0140662
Vvi17g0988 42 SUPERFAMILY Actin-like ATPase domain 2 41 IPR043129 -
Vvi17g0988 42 PANTHER HEAT SHOCK PROTEIN 70KDA 1 41 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0988 Vvi-Chr17 11927365 11927493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0988 1 41 Calmodulin-binding Proteins AT3G12580 73.171 2.12e-15 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0988 K03283 - egr:104445208 66.2402