Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0985 ATGAAGCTGATGCAACTGTCACGTGAGGAGGGCATGAGAGGTCAGGCATTTTTGGAGGCTCTCTGGAAGTCTCTAGAGAGGATGATCCCTCGTGATGAACACGTGAACATGGAAGCATGCACACCACGTTTGACCATAAATCTCAGATTCTCCCTCAACTTCTTCTGCGTTTCCGGTCCACGGTACCGGCCTCCATGTTTGCCGGCGTTGCCCACCTCCGGTGTGTCTTCGCCACCACCGGAGCAGCCCTCCAGACTGCCTCCCGACTTGCTTCAGATTGCGTCCGTCTCTGCTATTCTCTTCCTCGGGTTCGGTGTCCGCGCCTGCTCTGCCACTTCAGGACGTTTTCCGGTGGTTGTAGCCGCCGAGTGTCGAACTGTTCAGGAGCAGAGGATTCAAGATGAGATTTTGGTGTTGGAGTTCTCCGAGGTTCTTCCACTCGAGGTGGGAGTTTTGGCTATTGGGTTTGAAGGAACTCTAAATGACAAAATGAAGGGGTTCTACAGAAGCACTTTTGAGCATAATGGGGAAAAGAGGAATATGGCAGTTACACAGTTCGAACCAGCTGATGCCAGGCGATGCTTTCCATGCTGGGATGAGCCTGCTTGCAAGGCTACATTCAAGATCACATTAGATATGCCATCTGACCTCATAGCTCTTTCAAATATGCCTGTCATAGAAGAAAAAACTGAATGGGCATCTCAAGACAGTTTCCTATCAAGAATCGCCAATTATGTCTACATATTTGGTGGCAGTTACACTTGGCTTATACAAAGAATACTTTGCTTGTCCATACTCACTACCCAGATTGGACATGATAGCAATCCCCAAGACGCTGCAAGGGCATTGGATGTGTTGAATTTCACTCCTCTCAATGGAAAGCCACTTAGGATTATGTATTCCCATCGTGACCCTAGTATCCGCAAAAGTGGAACTGAAAATATATTTATTAAGAATTTGGATAAAGGGATTGACCACAAAGCATTGCATGACACTTTTTCCGCATTTGGTAACATCCTCTCATGTAAGGAAGCCACTGATGCATCTGGAATGCAAGGCTGCCATATAAATTGA 1074 0.4721 MKLMQLSREEGMRGQAFLEALWKSLERMIPRDEHVNMEACTPRLTINLRFSLNFFCVSGPRYRPPCLPALPTSGVSSPPPEQPSRLPPDLLQIASVSAILFLGFGVRACSATSGRFPVVVAAECRTVQEQRIQDEILVLEFSEVLPLEVGVLAIGFEGTLNDKMKGFYRSTFEHNGEKRNMAVTQFEPADARRCFPCWDEPACKATFKITLDMPSDLIALSNMPVIEEKTEWASQDSFLSRIANYVYIFGGSYTWLIQRILCLSILTTQIGHDSNPQDAARALDVLNFTPLNGKPLRIMYSHRDPSIRKSGTENIFIKNLDKGIDHKALHDTFSAFGNILSCKEATDASGMQGCHIN* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0985 357 SUPERFAMILY RNA-binding domain, RBD 275 347 IPR035979 GO:0003676
Vvi17g0985 357 PANTHER PROTEASE M1 ZINC METALLOPROTEASE 130 231 - -
Vvi17g0985 357 Pfam Peptidase M1 N-terminal domain 130 231 IPR045357 -
Vvi17g0985 357 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 127 231 IPR042097 -
Vvi17g0985 357 Gene3D tricorn interacting facor f3 domain 118 248 IPR042097 -
Vvi17g0985 357 Gene3D - 302 354 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0985 Vvi-Chr17 11874604 11876146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0985 249 350 Eukaryotic Initiation Factors Gene Family AT4G34110 59.813 9.00e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0985 K08776 - vvi:100264544 197.593