Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0979 ATGTGCGTCGCTCACACTCCGGGAAGTTTGTTAGGGTTAAGAAGGATGGTGCTGGTGGTAAGGGAACATGGGGAAAACTGCTTGACACTGATGGAACCGTATCAGCTTGTTGGGTCCACGATTTCAGACCCCTTAGATGAATATAAGAAAGCAGTGGTTTCCATCATAGAAGAATATTTCAGCACTGGTGATGTGGAATTGGCTGCATCTGACCTCAGGGAACTGGGATCAAATGAATATCATCCCTACTTCATTAAGAGGCTTGTTTCTATGGCCATGGACAGACATGATAAGGAGAAAGAAATGGCCTCAGTTCTGCTTTCAGCTCTTTATGCTGATGTCATCAGCTCTGCCCAGATTAGCCAAGGGTTTTTCATACTTCTCGAGTCTGCTGATGACCTTGCAGTGGATATACTGGATGCAGTTGATGTTCTTGCTTTGTTTATTGCTCGTGCTGTGGTCGATGACATCCTTCCTCCAGCTTTCCTTACTAGGGCAAAAAAAACACTCCCTGAGTCCTCCAAGGGACATCAGGTTATCCAAACCGCTGAGAAGAGCTATCTCTCTGCTCCACACCATGCAGAACTTGTGGAAAGAAGATGGGGTGGTAGCACCCATATTACTGTGGAGGAAGTGAAGAAAAAGATTGCTGATCTATTGAGAGAATACGTGGAGAGTGGAGATGCTTTTGAGGCATGTAGGTGCATAAGGGAGCTAGGGGTTTCATTCTTCCACCATGAGGTTGTGAAGAGAGCCCTAGTTCTTGCCATGGAGATCCGGACAGCAGAACCATTAATACTGAAGCTATTGAAAGAAGCGGCAGAGGAAGGCTTGATAAGTTCTAGTCAAATGCTTAAGGGGTTTGCTCGGTTAGCAGAGAGCCTTGATGATCTTGCCCTTGACATTCCATCGGCAAAAACCTTGTTTGAGTTGCTAGTTCCAAAGGCAATCTCTCAAGGATGGCTTGATGCCTCATTTCTGAAACCTGCAGGTGAAGATGGGGAAGTACACAATGAAGATGATGAAAAGGTGAGGCGGTTTAAGGAAGAGGCTGTAGCAATAATTCATGAATATTTTCTCTCAGATGACATTCCTGAACTCATCCGGAGCCTTGAAGATCTCGGTATGCCCAAGTTCAATCCTATTTTTCTGAAAAAGCTCATCACCCTGGCCATGGACAGGAAGAACAGAGAGAAAGAGATGGCATCTGTTCTGCTGTCGTCCCTTCATATTGAGATATTCTCAACTGAAGATATAGTTAATGGTTTTGTCATGCTTCTGGAATCTGCAGAAGACACAGCGCTAGACGTTTTGGATGCTTCAAATGAGCTTGCTTTATTTCTAGCTAGGGCTGTGATTGATGATGTCCTAGCTCCTCTGAATTTAGAAGAGATTGGCAGCAAGTTGCCACCAAATTGCAGTGGGAGTGAAACCGTGCATATGGCTAGATCACTGATTGCTGCCCGCCATGCTGGGGAGAGGATCCTGAGGTGCTGGGGAGGTGGGACGGGATGGGCTGTGGAGGATGCGAAGGACAAGATCATGAAGCTCCTGGAGGAGTATGAAAGCGGGGGTGATGTAGGTGAAGCTTGTCAGTGCATCCGGGATCTTGGAATGCCTTTCTTCAACCACGAGGTGGTGAAGAAGGCATTGGTTATGGCTATGGAAAAGAAGAATGACAGGATGCTGGACTTACTGCAGGAGTGCTTCTGTGAAGGGCTCATCACCATCAATCAGATGACCAAGGGGTTTGGGAGGATCAAGGATGGGCTTGATGACCTAGCACTCGACATTCCAAACGCAGAGGAGAAATTCAGTTTCTATGTGGAGTACGCAAGGAAGATGGGGTGGCTCCTAGCTTCCTTCGAGTCCTCTGCTGCTACAGACAGTTGA 1893 0.4675 MCVAHTPGSLLGLRRMVLVVREHGENCLTLMEPYQLVGSTISDPLDEYKKAVVSIIEEYFSTGDVELAASDLRELGSNEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISSAQISQGFFILLESADDLAVDILDAVDVLALFIARAVVDDILPPAFLTRAKKTLPESSKGHQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMLKGFARLAESLDDLALDIPSAKTLFELLVPKAISQGWLDASFLKPAGEDGEVHNEDDEKVRRFKEEAVAIIHEYFLSDDIPELIRSLEDLGMPKFNPIFLKKLITLAMDRKNREKEMASVLLSSLHIEIFSTEDIVNGFVMLLESAEDTALDVLDASNELALFLARAVIDDVLAPLNLEEIGSKLPPNCSGSETVHMARSLIAARHAGERILRCWGGGTGWAVEDAKDKIMKLLEEYESGGDVGEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFCEGLITINQMTKGFGRIKDGLDDLALDIPNAEEKFSFYVEYARKMGWLLASFESSAATDS* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0979 630 FunFam Programmed cell death protein 4 197 332 - -
Vvi17g0979 630 SUPERFAMILY ARM repeat 506 623 IPR016024 -
Vvi17g0979 630 Pfam MA3 domain 347 457 IPR003891 -
Vvi17g0979 630 Pfam MA3 domain 49 159 IPR003891 -
Vvi17g0979 630 Pfam MA3 domain 212 323 IPR003891 -
Vvi17g0979 630 Pfam MA3 domain 511 616 IPR003891 -
Vvi17g0979 630 Gene3D - 42 189 - -
Vvi17g0979 630 Gene3D - 341 489 - -
Vvi17g0979 630 ProSiteProfiles MI domain profile. 211 332 IPR003891 -
Vvi17g0979 630 SUPERFAMILY ARM repeat 343 502 IPR016024 -
Vvi17g0979 630 FunFam programmed cell death protein 4 39 190 - -
Vvi17g0979 630 SMART ma3_7 510 619 IPR003891 -
Vvi17g0979 630 SMART ma3_7 347 458 IPR003891 -
Vvi17g0979 630 SMART ma3_7 48 159 IPR003891 -
Vvi17g0979 630 SMART ma3_7 212 323 IPR003891 -
Vvi17g0979 630 SUPERFAMILY ARM repeat 45 205 IPR016024 -
Vvi17g0979 630 ProSiteProfiles MI domain profile. 47 168 IPR003891 -
Vvi17g0979 630 SUPERFAMILY ARM repeat 208 330 IPR016024 -
Vvi17g0979 630 Gene3D - 198 330 - -
Vvi17g0979 630 Gene3D - 497 627 - -
Vvi17g0979 630 PANTHER PROGRAMMED CELL DEATH 4 32 623 IPR039778 GO:0045892
Vvi17g0979 630 ProSiteProfiles MI domain profile. 509 628 IPR003891 -
Vvi17g0979 630 ProSiteProfiles MI domain profile. 346 467 IPR003891 -
Vvi17g0979 630 FunFam programmed cell death protein 4 335 490 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0979 513 609 Eukaryotic Initiation Factors Gene Family AT5G57870 32.000 4.73e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0979 - - vvi:100243296 1146.34