Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0974 ATGATGGATGGGCGAAGGCATTCTGTTGATATCCCTATTTCAAAAACTCTGGTGGCACTTAGGAGAGTGAGGTCACTGAGGGATCCATCCACTAACTCCATGAGTAAATTCTCTGCTTTGGTTGATAGTCTGAACTGGGAAACCAATTCAAGTAATGGGATTTCTCTGAGATTTGTAAATGGTTTTCAGGAAGGTGGCCCAGATAATAATGGTCTTTTGGGTTTAGAAAATTTTCCTGGACAAAGAGAGGAACTCTATGGTGGTTTGAGAAAACCTGACCCTAATACATCATTACTTGCAAATGAAGAGTCTAATGCTATTGATCATAATGATCGTGGATGTGGGATAAGGTGCTGCTGGTCAAGAACTCCGAGATTTAGAGAATCAAATCTTCTTTCAGATGTAGAAGACAATCCACTGTTATTGGGGGAAGTTGGTGAGACAATTCTATCTGGACAGAAATGGAGCTGGAAATGCTTTAACAATGAAATTACTCCATATTCAGAAAGCCCTAGGAGTCTCAGTCAGAAATTCAGGCCAAAAGCTTTCAATGAGTTGGTGGGACAAAATGTAGTGGCAAGGTCTCTCTTGGGTGCCATCTCAAGAGGAAGGATAACCTCCTTTTATCTTTTTCATGGTCCTCGTGGTACGGGTAAAACTTCTGCCTCAAGGATTTTTGCAGCGGCATTGAATTGTCTGTCGCTTGAGGAGCATAGGCCATGTGGTCTATGCCGAGAATGTGTTTTGTTCTTTTCTGGAAGGAGTAGGGACAGTAAAGAGATAGATACTGTGAGAATTAATCAAACAGGTAGAATGAGATCCCTTATTAAGCATGCCATTGGCCGTCCTGTTTCCTCACGATTTAAGGTCTTCATAATTGATGAGTGCCATTTGTTGCGAGGGGAAACTTGGGCTACTGTTTTGAATAGCCTAGATGACCTTCCTCAACATGTTGTCTTCATAATGATCACTCCTAGCCTGGATAAGCTGCCACGGAGTGCAGTGTCACGGTCCCAAAGGTACCACTTTCCAAAGATAAAAGATGCTGATATTGCAAGCAAATTGGGGAGAATCTGTGTTGAAGAATGTCTCGAATTTGACCAGGTTGCTTTAGACTTCATTGCTGCTAAATCTAATGGTTCACTTCGGGATGCAGAGATGATGCTTGATCAGCTGAGCTTGCTTGGAAAAAGAATTACTATGTCCATGACCTATGAACTTATTGGAATTGTTTCTGATGATGAGTTGCTTGATTTACTGGATCTAGCTTTGTCATCTGACACCTCAAATACAGTTAGAAGGGCCAGGGAATTGATGAGATCAAGGATTGATCCTATGCAACTGATATCACAGCTAGCAAATCTCATAATGGATATTCTTGCTGGAAAATGCCAAGAAGGCACTTCTGAAGTTAGAAGAAATTTTTTTGAAGGACATACTTCTGAAGTGGACTTGCAGAAGCTTAGTCATGCATTGAAAATTCTTTCTGAAACTGAGAAACAATTGAGGGCATCAAAGAATCAAACAACGTGGCTAACTGTAGCTCTTCTACAGTTAAGCTCTGTGGAGTCTTCTTTCTTGGATGCAAATGATTCAAGGGCATTTTTGAGAACAGAGCATCCAAGAGGGGAAAACGTGAAGCGCCTTGTCACTTGTGCATGTGACAACAATAAACCACATATATGTGAAGTACAGGAGGATTGCAAAGGACAATTAGAATTTTTATGGAAGCAAGCTACTGAAATATGTCAATCCAGTTCACTCAAAAACTTTCTGAGGAAGCAAGGGAAGTTGTCTTCTGTCATTGTTAGCCAAGGTATGGCAGTAGCTGAACTGGAATTCCAGCATCCTGACTATGTTTCCAAGGCTGAGAAATCATGGAAACTGATTGCAAGCTCACTCCAGTCTATCCTGGGTTGTAATGTGGAGATTAGGATCAATCTTGCACCTTGCACTTCTGTGAAAGGGTATGCTAAAGTGAAGAAGCCATCCTTCAGTTTTTTCAGTTGTTCCCGCAGAATGCGACTTAAATCACATTCAACTTCTGAACATGGAAGTGATCAGTCTGATTGTTCTGATTTCACTTCTGAGAAAGCGATGATCAGGGACAAAACTATAGGAACTTGTTCGTCAGACTGTGGTTCTCAAGTGTCACATGTCTGCTATCTGAGAACGGAAGCGGCAAGGACTTTAAGAAATAGGGAAGGAAATGTGCTAGGCATTGGAACAATCACTCCTCACAGACCATTTCAAGATGAAATACCAAAGGGGACTGGATTTGAGGTTGGTTCTTCTAAGGAAGAGCAAAGCAGCTGTGGATGCCAGGAACCAGAGAATCAACCAAACTGTCTCTTCAACACTTTTGGACTCCATAAAAAGTTACGATCATCAGAGGCTTCTCAGATGACCTGTTTGAGGTACCAAGCACAAAACAAGCTTGCATTGTCTGTCCCCAAGAATACATCTTTTGAACCATATTTCTGGGCCAATGATCGTTATGCTTTCTCCAGCAGCTCTAACAATTTTAATTCCTGCCCCAGAGATGAGGATGGACTGAGGGAGGATTCCAAGGTACATTGCTGGGGAGCCCCCACGTTTCCTCTGAAGAAGGCTTGGCAATCAAGGCATCGACGGGAAGGATCGAATCTAGTGGGATGGGTTCTACCATGTGGCGCAACAAAGTAG 2685 0.4223 MMDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKFSALVDSLNWETNSSNGISLRFVNGFQEGGPDNNGLLGLENFPGQREELYGGLRKPDPNTSLLANEESNAIDHNDRGCGIRCCWSRTPRFRESNLLSDVEDNPLLLGEVGETILSGQKWSWKCFNNEITPYSESPRSLSQKFRPKAFNELVGQNVVARSLLGAISRGRITSFYLFHGPRGTGKTSASRIFAAALNCLSLEEHRPCGLCRECVLFFSGRSRDSKEIDTVRINQTGRMRSLIKHAIGRPVSSRFKVFIIDECHLLRGETWATVLNSLDDLPQHVVFIMITPSLDKLPRSAVSRSQRYHFPKIKDADIASKLGRICVEECLEFDQVALDFIAAKSNGSLRDAEMMLDQLSLLGKRITMSMTYELIGIVSDDELLDLLDLALSSDTSNTVRRARELMRSRIDPMQLISQLANLIMDILAGKCQEGTSEVRRNFFEGHTSEVDLQKLSHALKILSETEKQLRASKNQTTWLTVALLQLSSVESSFLDANDSRAFLRTEHPRGENVKRLVTCACDNNKPHICEVQEDCKGQLEFLWKQATEICQSSSLKNFLRKQGKLSSVIVSQGMAVAELEFQHPDYVSKAEKSWKLIASSLQSILGCNVEIRINLAPCTSVKGYAKVKKPSFSFFSCSRRMRLKSHSTSEHGSDQSDCSDFTSEKAMIRDKTIGTCSSDCGSQVSHVCYLRTEAARTLRNREGNVLGIGTITPHRPFQDEIPKGTGFEVGSSKEEQSSCGCQEPENQPNCLFNTFGLHKKLRSSEASQMTCLRYQAQNKLALSVPKNTSFEPYFWANDRYAFSSSSNNFNSCPRDEDGLREDSKVHCWGAPTFPLKKAWQSRHRREGSNLVGWVLPCGATK* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0974 894 FunFam Protein STICHEL-like 1 isoform C 410 523 - -
Vvi17g0974 894 CDD HLD_clamp_pol_III_gamma_tau 346 409 IPR045085 -
Vvi17g0974 894 SUPERFAMILY post-AAA+ oligomerization domain-like 416 518 IPR008921 GO:0003677|GO:0006260
Vvi17g0974 894 FunFam DNA polymerase III subunit gamma/tau 347 409 - -
Vvi17g0974 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 396 IPR027417 -
Vvi17g0974 894 SMART AAA_5 205 347 IPR003593 GO:0016887
Vvi17g0974 894 CDD AAA 187 337 - -
Vvi17g0974 894 Gene3D - 347 409 - -
Vvi17g0974 894 Pfam DNA polymerase III, delta subunit 189 346 - -
Vvi17g0974 894 Gene3D - 166 344 IPR027417 -
Vvi17g0974 894 Pfam DNA polymerase III subunits gamma and tau domain III 405 524 IPR022754 GO:0003887
Vvi17g0974 894 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 174 584 - -
Vvi17g0974 894 Gene3D - 410 524 - -
Vvi17g0974 894 NCBIfam DNA polymerase III subunit gamma/tau 173 519 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0974 Vvi-Chr17 11694437 11701083 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0974 164 525 Core DNA Replication Machinery Family AT1G21690 23.243 6.25e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0974 - - vvi:100253504 1567.75