Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0973 ATGGCTAGCTCTTCACTTTCCCTCTTCTTCCTCTTCTCTCTCCTGTCTCCAATTCTCATTGCCTCCTCTCCGGTTCAGGACCCTGAACTGGTGATACAAGAAGTACATAGGAGCATCAATGAGTCAAGGAGGAACTTGGGGTATCTGTCTTGTGGGAGTGGGAACCCCATTGATGACTGCTGGAGGTGTAACGCCAATTGGGAGAAGAACCGGCAGAGCCTGGCTGATTGTGCAATTGGGTTTGGGAAGAATGCCATAGGTGGCAAGAACGGAAAGATTTACGTGGTCACAGACTCCAGTGATGATGATGTGGTGAATCCTAAGCCGGGGACTCTTCGGTATGCAGTCATCCAAGATGAGCCCTTGTGGATCATCTTTGCTCGGGACATGGTGATTAAGTTGAAGGAAGAGTTGATCATGAACTCCTTCAAGACCATTGATGGCAGGGGAGCTAGTGTTCACATTGCAGGTGGACCATGCATTACTATACAGTTTGTGACCAACATTATCATACATGGACTCAACATCCATGACTGCAAGCAAGGAGGGAATACTAATGTTAGAGACTCCCCAAGTCACTACGGGTTTAGGACGATATCAGACGGTGATGGGGTGTCCATCTTTGGTGGGAGCCATATCTGGGTGGACCACTGCTCACTCTCAAACTGCCATGATGGACTCATTGATGCCATCCATGGCTCCACTGCCATCACTATCTCAAACAATTACATGACTCACCATGATAAAGTCATGCTTTTGGGCCACAGTGATTCCTACACTCAGGACAAGAACATGCAAGTCACTATAGCCTTCAATCACTTTGGAGAAGGGCTTGTCCAAAGAATGCCAAGATGTAGACATGGATACTTCCATGTGGTAAACAATGACTACACCCATTGGGAAATGTATGCCATTGGAGGGAGTGCTGACCCAACCATCAACAGCCAAGGCAATAGGTTTCTTGCACCCAATGATAGATTCAGCAAAGAGGTGACCAAACATGAGGATGCACCAGAAAGTCAATGGAAGAACTGGAATTGGAGGTCAGAGGGAGACTTGATGTTAAATGGTGCATATTTCACACCATCAGGGGCAGGAGCCTCATCAAGTTATGCCAGGGCATCAAGCTTGGGGGCAAGACCATCTTCCTTGGTGGCTTCCATCACTGGGTCAGCAGGTGCACTTAGCTGCAAGAAAGGTTCTCGATGCTGA 1212 0.4785 MASSSLSLFFLFSLLSPILIASSPVQDPELVIQEVHRSINESRRNLGYLSCGSGNPIDDCWRCNANWEKNRQSLADCAIGFGKNAIGGKNGKIYVVTDSSDDDVVNPKPGTLRYAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGLNIHDCKQGGNTNVRDSPSHYGFRTISDGDGVSIFGGSHIWVDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFLAPNDRFSKEVTKHEDAPESQWKNWNWRSEGDLMLNGAYFTPSGAGASSSYARASSLGARPSSLVASITGSAGALSCKKGSRC* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0973 403 Gene3D - 54 396 IPR012334 -
Vvi17g0973 403 PANTHER PECTATE LYASE 18-RELATED 34 401 IPR045032 GO:0030570
Vvi17g0973 403 Pfam Pectate lyase 137 320 IPR002022 -
Vvi17g0973 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Vvi17g0973 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Vvi17g0973 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Vvi17g0973 403 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Vvi17g0973 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Vvi17g0973 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Vvi17g0973 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Vvi17g0973 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Vvi17g0973 403 FunFam Pectate lyase 54 396 - -
Vvi17g0973 403 SMART amb_all 129 326 IPR002022 -
Vvi17g0973 403 SUPERFAMILY Pectin lyase-like 40 397 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0973 Vvi-Chr17 11675140 11676711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0973 5 403 Polysaccharide Lyase AT5G63180 80.645 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0973 K01728 - vvi:100243265 790.415