Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0971 ATGGAGACGTATGGAATTCATCTGCTGGCTCTGTCGCATGTGTTTTTGGTCCCACAGCTGAAGCAGAGATGCACCAAAGGATTGGCTAAGCGGCTGACAAACGACAATGTAGTGGACGTGCTTCAGCTCGCGAGGCTCTGCGATGCCCCAGATCTCTACATTAAGTGCATGAGGTTGATCTCGGATCATTTCAAGACAGTGGAGAAGACTGAGGGTTGGATGTTTTTGCAAGATCACGACCCCCATCTCGAGCTCGAGATTATGCAGTTCATGGAAGAATCTGAATCGAGGAAGAAGCGAAGTAGGCGGCGTAGGGAGGAAAGGTGTTTGTATCTGCAGCTGAGCGAGGCGATGGAATGTTTGGAGCATATATGCACAGAAGGGTGCACGAGCGTTGGGCCCTACCATCTGGAGCCTACAACTAAGAAGGGGCCATGTGGGAAGTTTTCAACGTGTCATGGTCTGCAGATGCTAATTAAACACTTCGGGACCTGCAAGAAGAGGGTCAATGGAGGTTGCTCTCGGTGCAAGCGCATGTGGCAGCTCCTCCGCCTTCACTCCTCCATCTGTGACCAAACCGATTTGTGCAGAGTTCCTCTTTGCAGGCAATTCAAATTGAAAGCACAACAAGTGAAAAAGGGTGAGGATGCAAGGTGGAAGCTACTTGTAAGGAAGGTGGTGTCAGCCAAAGCCATGTCTTCCTTGTCCTTGCCTAAGAGGAAAAGGGAAGAGGAGCCAAGACAGACCCTGGATCACCGCCATGGACTTGGAAGCTTTAGACTGTGA 786 0.5051 METYGIHLLALSHVFLVPQLKQRCTKGLAKRLTNDNVVDVLQLARLCDAPDLYIKCMRLISDHFKTVEKTEGWMFLQDHDPHLELEIMQFMEESESRKKRSRRRREERCLYLQLSEAMECLEHICTEGCTSVGPYHLEPTTKKGPCGKFSTCHGLQMLIKHFGTCKKRVNGGCSRCKRMWQLLRLHSSICDQTDLCRVPLCRQFKLKAQQVKKGEDARWKLLVRKVVSAKAMSSLSLPKRKREEEPRQTLDHRHGLGSFRL* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0971 261 CDD BACK 33 76 - -
Vvi17g0971 261 MobiDBLite consensus disorder prediction 237 261 - -
Vvi17g0971 261 SUPERFAMILY TAZ domain 109 209 IPR035898 -
Vvi17g0971 261 SMART TAZ_2 108 202 IPR000197 -
Vvi17g0971 261 Pfam TAZ zinc finger 115 201 IPR000197 -
Vvi17g0971 261 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 1 244 IPR044513 -
Vvi17g0971 261 FunFam BTB/POZ and TAZ domain-containing protein 2 104 230 - -
Vvi17g0971 261 Gene3D - 31 105 - -
Vvi17g0971 261 FunFam BTB/POZ and TAZ domain-containing protein 2 33 103 - -
Vvi17g0971 261 Gene3D TAZ domain 106 229 IPR035898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0971 Vvi-Chr17 11643187 11644749 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vvi17g0971 zf-TAZ 2.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0971 - - vvi:100260390 518.85