Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0968 ATGGGAAAACTCGATTTAGAAACACAAAAGGATGATACATTAACAAGCAAACCAGAAGGAAATGAAAAAATAGAGAAGGATGATGTATCATCAACCAAACCTGAAGAAAGTGGGAAACCTGCAACTCCATCTGGGTCATTACGGTCGATTTTGAGATACTCGGACTGGAAGGACATGGTGTTGATGACACTGGGGACGTTTGGCTGTGTTGCAGACGGATTAACCATGTCAGCTATGATGCTGGTTATCAGCAAACTGATGAATGCTTACGCCGTTACATCTCTCTCCCTTGCAGACATAGATAAGTACGCATTGGCCTTACTCTATGTAGCACTTGGCATAGGTGCGGGTTCATTTCTAGAAGGATTTTGTTGGGCACGCACCGCAGAAAGGCAAACTTCTAGACTGCGCAGGAAATATTTACAAGCAGTTCTGCGGCAAGATGTTGGATTCTTCGAGAGAACTCATGGCGCATCCATGACCTCCCAAGTAGTCTCAAGTATTTCAACAGACATTCTTGTCATACAAGGAGTTCTCAGTGAGAAGCTTCCAAATTTCATCATGAATATAGCAATGTTCATCACATCTCAAATGACTGCTCTGTACCTCTGTTGGAGACTGGCTATTGTTGCCATTCCTGCACTTTCCATGTTGATTATTCCAGGAATAGTATATGGAAAGCTGTTATCAGGGCTTGGAGAGAAGATACAAGAAGCTTATTCTGTTGCTGGAGGAATTGTGGAGCAGGCAATATCATCAATCAGGACTGTTTATTCTTATGTTGGAGAGGAAAGAACAGTGAAAAGCTATTCAGTTGCACTGGAACCGATTTTAAAGCTAGGGATCAAACAAGGACTGATGAAGGGAATGGCCATTGGCAGCATAGGAGTTACATATGCCGTTTGGGCACTACAGGGGTGGTATGGGAGCATTTTGGTCACTGACAAAGGAGTTAAAGGTGGCAATGTTTTCACTACAGGAGTGTGCATAATATACGGAGGACTTGCTCTTGGCAGTTCTTTCCTCAATGTGAAGCACTTTACTGAAGCAAATGCAGCAGCTGCACTTATTTTAGAAATGATTGAGCGTGTACCAAGCATAGATTCTGCAGATCAACAAGGCAAAACCATCACCGAAGTCAAAGGTGAATTGGTGTTTGAGGAAATTGATTTTGCATATCCATCACGGCCAGGAAACTTAGTATTAAGAAAATTCAATCTTAAAGTGGTTGCTTGCCAGACTGTTGGATTGGTGGGTAGCAGTGGTTCAGGTAAATCTACTGTGATTAATTTGCTCCAAAGATTCTATGATCCTCTTGGGGGAGAGATACTGTTGGATGGGATTGGCATAAAAAGCCTTCAGCTAAAATGGTTACGAAGCCAGATGGGTCTAGTTGCCCAAGAGCCTATACTTTTTGCAACCACAGTCAAAGAGAATATTCTATTTGGAAAAGAGGAGGCCTCACAGGAGGAGATAGTTCAAGCAGCTAAAGCTGCCAATGCACATAACTTCATTTCACAACTACCCAATGGATATGACACCCTGGTAGGACAATTGGGTATTCAGATGTCTGAAGGGCAGAAACAAAGGATTTCCATTGCAAGGGCATTGCTAAGAGATCCAAGAATCCTGCTGCTTGATGAAGCCACTAGTGCATTGGATTCCCAGTCTGAAAAGGCTGTCCAGGATGCTTTCAATCAGGCATCATTAGGAAGAACCACTATAATTGTTGCACATCGCCTGTCTGCACTGCGTAATGCTGACTTGATTGCTGTTATTCAATCTGGAGAAGTAGTGGAAGCTGGTTCCCATGACCAACTTATACAAAACAGGCACGGGCCATACTCAGCAATGGTGCAGCTGCAGAAAACAACATTCATGAAAGATGAAATCATATCAGAGCCTAAAGGAAATGAAAGTCACAATTCCACCTCCACCACTGAAGAAGCTGCCCCCACTGCAGAAATAGCAAACAAATTGAGTCCTCAGTTACCTAGTCATCAGACAAACAGCAACCAACAGTCAGAAGATCATTACAGCCCCCCATCTATATGGCAACTGATGTGGATGACAACACCAGAGTGGAAGCCAACCCTAGTCGGTTGCATTGGTGCTCTTATCTTTGGATTAGTTCAGCCAATGAGCTCTTTCTGCATGGGTGCACTTCTAGCTGTTTACTTCATCAATGACCATGATGAGATTAGATCACAAACAAAAATGTACTGTTTTGCCTTCTTAGCCTTTGCTATCTTTGCTTTCATCACCAATGTCATTCAGCATTACCACTTTGGTGTTATGGGAGAGAACCTAACAAGAAGGGTCAGGGAGGCAAGCCTCACAAAGATCTTGACATTTGAGATCGAATGGTTTGATCAAGAACACAACAGCACTGGGGCTCTCTGTTCGAGATTATCTGTGGATTCGACCATGGCAAGAACTCTTGTTGCTGATCGGTTGTCACTGTTGACTCAAGCCATCTCTGCTGCAGCTTTAGCAGTTATTTTGGGTATGGTTTTAGCTTGGAAACTTGCCATTGTAGTTACCGCTTTACAACCATTCATCATAGGTGCTTTTTATACTAGAGCAGTAATGATGAGGAGTATGTCCAAGAAAATCTTGAAAGCGCAGAATAAGAGCAGTGAATTAGCAAGTGAGGCTGTTGGGAACCACAGAATCATTACTGCATTCTATTCTCAGGAAAAGGTTTTGTCACTTTTTGAGGTTACACAGAAAGATCCCAAGAATGAGAGCCTTAAACAATCTTGGTATGCTGGGCTTGGGCTATTTACCTCACAGTTCCTCACTTCTGGTAGTGCAGGACTAATTTTCTGGTATGGAGGGAGGCTGCTATACAATAAAGAAATTTCATATAAGCACCTGTTTCAGACATTTTTCATCCTGGTGGCAACAGGGAGACTTATTGCAGAAACGGGGAGCATGACTGCTGATTTATCAAAGGGCACAAATGCATTAAAGTCAGTTTTTATGACTCTAGAAAGAAAGAGCAAAATGGACCCAGATGAAATCAAAGGGATAAAACCAGAAAAGCTTATTGGAGATATCGAATTTAAAGAGGTGGATTTCTTTTATCCAACAAGACCAAAACAGATGATATTGATGGGTGTAAGCCTAAAGGTTGATGCTGGAAAAGTAGTGGCATTAGTTGGCCAAAGTGGATCTGGAAAATCTACTGTCATCAGAATGATTGAGAGATTCTATGACCCATCAAAAGGATCTATTGAAGTTGATGGAATTGACATCAAACACTACAATCTAAGAGCTTTAAGGTTACATATTGCATTGGTAAGTCAGGAGCCCACTCTATTTGCAGGAACCATCCAGGAAAACATTGCATATGCGAAAGAGAATGCAAGTGAAGCTGAGATTATTGAAGCGGCCACTGTAGCAAATGCCCATGAATTTATAAGTTCCATGAAGGATGGTTATGCAACCTATTGTGGGGAAAGAGGTGTGCAACTATCAGGAGGGCAAAAGCAGAGATTAGCTCTTGCTCGAGCAATCTTGAAAAATCCTGCAATATTGCTTTTAGATGAGGCAACGAGTGCATTGGATGTCAAATTGGAGAGCCTTGTTCAAGATGCACTGGAGAAGACCATGGTTGGTCGGACATGCCTGGTTGTAGCTCATCGACTGTCCACAATTCAAAAATCAGATAAAATATCAGTGATTGATGATGGGAAGATTGTGGAAGAGGGGTCGCATGGTGAGCTACTTGCAAAGGGAGAAAAAGGTGCATATTTTTCACTTGTAAAACTCCAACAGCATGCCACCATGGAGAAGAGAGAGCTCAATTTAATTGGTAGGAACATCGAGCCATCCAAGGATGAATGA 3852 0.4234 MGKLDLETQKDDTLTSKPEGNEKIEKDDVSSTKPEESGKPATPSGSLRSILRYSDWKDMVLMTLGTFGCVADGLTMSAMMLVISKLMNAYAVTSLSLADIDKYALALLYVALGIGAGSFLEGFCWARTAERQTSRLRRKYLQAVLRQDVGFFERTHGASMTSQVVSSISTDILVIQGVLSEKLPNFIMNIAMFITSQMTALYLCWRLAIVAIPALSMLIIPGIVYGKLLSGLGEKIQEAYSVAGGIVEQAISSIRTVYSYVGEERTVKSYSVALEPILKLGIKQGLMKGMAIGSIGVTYAVWALQGWYGSILVTDKGVKGGNVFTTGVCIIYGGLALGSSFLNVKHFTEANAAAALILEMIERVPSIDSADQQGKTITEVKGELVFEEIDFAYPSRPGNLVLRKFNLKVVACQTVGLVGSSGSGKSTVINLLQRFYDPLGGEILLDGIGIKSLQLKWLRSQMGLVAQEPILFATTVKENILFGKEEASQEEIVQAAKAANAHNFISQLPNGYDTLVGQLGIQMSEGQKQRISIARALLRDPRILLLDEATSALDSQSEKAVQDAFNQASLGRTTIIVAHRLSALRNADLIAVIQSGEVVEAGSHDQLIQNRHGPYSAMVQLQKTTFMKDEIISEPKGNESHNSTSTTEEAAPTAEIANKLSPQLPSHQTNSNQQSEDHYSPPSIWQLMWMTTPEWKPTLVGCIGALIFGLVQPMSSFCMGALLAVYFINDHDEIRSQTKMYCFAFLAFAIFAFITNVIQHYHFGVMGENLTRRVREASLTKILTFEIEWFDQEHNSTGALCSRLSVDSTMARTLVADRLSLLTQAISAAALAVILGMVLAWKLAIVVTALQPFIIGAFYTRAVMMRSMSKKILKAQNKSSELASEAVGNHRIITAFYSQEKVLSLFEVTQKDPKNESLKQSWYAGLGLFTSQFLTSGSAGLIFWYGGRLLYNKEISYKHLFQTFFILVATGRLIAETGSMTADLSKGTNALKSVFMTLERKSKMDPDEIKGIKPEKLIGDIEFKEVDFFYPTRPKQMILMGVSLKVDAGKVVALVGQSGSGKSTVIRMIERFYDPSKGSIEVDGIDIKHYNLRALRLHIALVSQEPTLFAGTIQENIAYAKENASEAEIIEAATVANAHEFISSMKDGYATYCGERGVQLSGGQKQRLALARAILKNPAILLLDEATSALDVKLESLVQDALEKTMVGRTCLVVAHRLSTIQKSDKISVIDDGKIVEEGSHGELLAKGEKGAYFSLVKLQQHATMEKRELNLIGRNIEPSKDE* 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0968 1283 CDD ABC_6TM_Pgp_ABCB1_D2_like 688 1004 - -
Vvi17g0968 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 384 620 IPR003439 GO:0005524
Vvi17g0968 1283 MobiDBLite consensus disorder prediction 1 34 - -
Vvi17g0968 1283 CDD ABC_MTABC3_MDL1_MDL2 385 622 - -
Vvi17g0968 1283 SMART AAA_5 1048 1234 IPR003593 GO:0016887
Vvi17g0968 1283 SMART AAA_5 411 597 IPR003593 GO:0016887
Vvi17g0968 1283 SUPERFAMILY ABC transporter transmembrane region 43 365 IPR036640 GO:0005524|GO:0016020
Vvi17g0968 1283 CDD ABC_MTABC3_MDL1_MDL2 1021 1260 - -
Vvi17g0968 1283 PANTHER ABC TRANSPORTER B FAMILY 25 747 IPR039421 -
Vvi17g0968 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1015 1260 IPR027417 -
Vvi17g0968 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 622 IPR027417 -
Vvi17g0968 1283 FunFam ABC transporter B family member 1 374 623 - -
Vvi17g0968 1283 SUPERFAMILY ABC transporter transmembrane region 687 1001 IPR036640 GO:0005524|GO:0016020
Vvi17g0968 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 64 349 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi17g0968 1283 ProSitePatterns ABC transporters family signature. 1160 1174 IPR017871 GO:0005524|GO:0016887
Vvi17g0968 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 699 986 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi17g0968 1283 Gene3D - 1011 1271 IPR027417 -
Vvi17g0968 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1021 1257 IPR003439 GO:0005524
Vvi17g0968 1283 Pfam ABC transporter transmembrane region 699 968 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi17g0968 1283 Pfam ABC transporter transmembrane region 63 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi17g0968 1283 Pfam ABC transporter 1040 1188 IPR003439 GO:0005524
Vvi17g0968 1283 Gene3D - 374 623 IPR027417 -
Vvi17g0968 1283 MobiDBLite consensus disorder prediction 1 45 - -
Vvi17g0968 1283 Gene3D ABC transporter type 1, transmembrane domain 50 927 IPR036640 GO:0005524|GO:0016020
Vvi17g0968 1283 FunFam ABC transporter B family member 4 1011 1268 - -
Vvi17g0968 1283 Pfam ABC transporter 402 551 IPR003439 GO:0005524
Vvi17g0968 1283 CDD ABC_6TM_Pgp_ABCB1_D1_like 62 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0968 Vvi-Chr17 11622796 11629827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0968 700 1263 Calmodulin-binding Proteins AT2G36910 36.444 8.14e-105 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0968 K05658 - vvi:100257018 2429.05