Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0963 ATGGCCTCCATTTCATTTTCCGGCGAATCCCTCATCTCTCTGCTAACTCTTTTCTCTCTCCTTTTTCTCACCCACGCCACCCTCCATCTCCACCCCTCCGATTATGACGCCCTCCTCCTCATCCAAAAACACTTGGGCATCAACGGTCAACGCCGCTCCTCCCCCAACCCATGCAACACCCCCGGAGTATTTTGCGAGAGGAGAGTCTCTGACAACGCCACAGTGCTCAGAGTCACCCGTCTGGTTTTCAAATCCCAACGTCTCTCAGGTTTCCTATCTCCCCAAATCGGACGCCTCTCCCAGCTCAAAGAGCTCTCCCTCCCGGACAACTATCTCCTTGACCGGATCCCATCCCAAATTGTTGACTGCCGGAAACTGGAAATCCTTGACCTCCGGAACAACCGATTCTCCGGCGAAATTCCGCCGGAATTGTCCTCCCTGGTGCGCCTCCGTATCCTGGATCTCTCTTCCAATAAGTTTTCCGGGAACTTGAATTTCTTGAGGTTTTTTCCCAACCTGGAGAAGCTCTCTCTGGCTGAAAACCTGTTTTCCGGGAAAGTACCGGTGTCTGTACGCTCGTTTCGCAATCTTAGAGTCTTCAACCTTTCCGGGAACAGCTTTCTGGAAGGCCCAGTGCCGGGGATGAGGGAGGTGGAGGTGGAGTCCCTAGCGTCTGCACTTCCGAGACGATACGTCTTTGCTGAGAATTTAACAAGGGGAAGTAGCAATCATTCAGCAGTTGCACCAAGTGGAAGTTCAGGGTATTATGGAGAAGCACCAGCTCCTTCTCCTTCTGCACCACCTCATAAGCATCGGAAAAACAAGAAGCTGAGCGCATGGATTCTCGGATTCATCGCTGGAGCAGTTGCTGGGTGCATATCTGGGTTGGTGTTCTCCGTGCTTTTTAAAGCACTCCTGGTGTTGGTGAGAGGTGGTGGAAAGGAGTCAGGGCCGGCAATCTTCAGTCCGTTGATCAAAAAGGCGGAGGACTTGGCTTTCTTGGAGAAAGACGATGGATTGGCATCACTGGAGATCATAGGCAAAGGTGGATGTGGAGAGGTGTACAGAGCTGAGTTACCAGGTGGGAAACTGATTGCTATAAAGAAGATTGTTCAACCTCCAAAGGATGCAGCAGAACTGGCTGAGGAAGACAGTAAGCTCTTGAACAAGAAGATGCGCCAAATTCGGTCGGAGATTCAAACTGTTGGGAATATTAGGCATCGAAACCTTCTTCCTTTGCTGGCACATGTGTCCCGGCCTAACTGCCATTACCTGGTATATGAGTTCATGAAGAATGGCAGCTTACAGGACATGTTAACTCAAGTTTCAGAGGGGACTAGAGAACTGGACTGGCTGGCTCGTCACAGGGTCGCACTAGGGGTGGCTGCAGGGCTTGAATACCTCCATATGAGCCACAGCCCCCGCATCATTCATAGAGACCTCAAACCTGGAAACATCCTTCTCGATGATGACATGGAAGCACGAATTGCAGATTTTGGACTCGCAAAAGCAGTCCCAGATGCTAACACCCATGTCACAACTTCTAATGTGGCCGGAACTGTGGGATACATTGCGCCCGAGTATCACCAGACACTCAAGTTTACAGACAAGTGCGACATATACAGCTTTGGGGTTTTGCTTGGGGTTCTGGTGGTAGGAAAGCTTCCATCTGATGACTTTTTCCAGCACACAGCTGAGATGAGCTTGGTGAAGTGGATGGCTAATATAAGGACTTCAGACGATCCCAGCAGAGCCATTGATAGAAAGCTGATGGGAAATGGATTTGAAGAGCAGATGCTGCTGGTTCTAAAGATAGCTTGCTTCTGCACTGTTGATGATGCAAAGATAAGGCCTAACAGTAAGGACGTTAGGACCATGTTGTCTCAGATCAAACATTAG 1899 0.4997 MASISFSGESLISLLTLFSLLFLTHATLHLHPSDYDALLLIQKHLGINGQRRSSPNPCNTPGVFCERRVSDNATVLRVTRLVFKSQRLSGFLSPQIGRLSQLKELSLPDNYLLDRIPSQIVDCRKLEILDLRNNRFSGEIPPELSSLVRLRILDLSSNKFSGNLNFLRFFPNLEKLSLAENLFSGKVPVSVRSFRNLRVFNLSGNSFLEGPVPGMREVEVESLASALPRRYVFAENLTRGSSNHSAVAPSGSSGYYGEAPAPSPSAPPHKHRKNKKLSAWILGFIAGAVAGCISGLVFSVLFKALLVLVRGGGKESGPAIFSPLIKKAEDLAFLEKDDGLASLEIIGKGGCGEVYRAELPGGKLIAIKKIVQPPKDAAELAEEDSKLLNKKMRQIRSEIQTVGNIRHRNLLPLLAHVSRPNCHYLVYEFMKNGSLQDMLTQVSEGTRELDWLARHRVALGVAAGLEYLHMSHSPRIIHRDLKPGNILLDDDMEARIADFGLAKAVPDANTHVTTSNVAGTVGYIAPEYHQTLKFTDKCDIYSFGVLLGVLVVGKLPSDDFFQHTAEMSLVKWMANIRTSDDPSRAIDRKLMGNGFEEQMLLVLKIACFCTVDDAKIRPNSKDVRTMLSQIKH* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0963 632 Gene3D Ribonuclease Inhibitor 31 229 IPR032675 -
Vvi17g0963 632 SUPERFAMILY L domain-like 54 211 - -
Vvi17g0963 632 Gene3D Transferase(Phosphotransferase) domain 1 430 632 - -
Vvi17g0963 632 Coils Coil 378 398 - -
Vvi17g0963 632 FunFam leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 327 429 - -
Vvi17g0963 632 SMART serkin_6 340 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0963 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Vvi17g0963 632 Pfam Leucine rich repeat 100 160 IPR001611 GO:0005515
Vvi17g0963 632 FunFam Leucine-rich repeat receptor-like protein kinase 430 632 - -
Vvi17g0963 632 MobiDBLite consensus disorder prediction 241 271 - -
Vvi17g0963 632 FunFam Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 31 230 - -
Vvi17g0963 632 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 72 631 - -
Vvi17g0963 632 SUPERFAMILY Protein kinase-like (PK-like) 337 627 IPR011009 -
Vvi17g0963 632 ProSiteProfiles Protein kinase domain profile. 340 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0963 632 Pfam Protein kinase domain 343 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0963 632 Gene3D Phosphorylase Kinase; domain 1 332 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0963 Vvi-Chr17 11534500 11536398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0963 14 632 Receptor kinase-like Gene Family AT2G31880 63.780 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Vvi17g0963 Pkinase 3.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0963 - - vvi:100248492 1201.81