Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0960 ATGTCGTCTGCAACTCACCATCTCTTGAAGCCCTTCTCAATCCCAAATGGGTCTCCAATCTCTCTTCCCACCATCTTCTCCACCAAAACCCCACATTCATATCTGCCAATTCCTCCTCACAAACCCATTAAGCTTCTCTTATCATGCTCTCAATCTTCACTCTTTTCCCCATCTTTGTTTCTTAAGAGCAAGACCCTTTCTTCTTCTGTAGTCACCTTCGTTGCCCAGACCTCGGACTGGGCTCAGCAGGAAGAAGACAACACAGTGATAATTGAAGAAGAGCAGGAAGAGAAGGTCACTTGGGAAAATGAAGAGGTTGAGGGGCCTGATGCCCAAGCATCCGATTGGGAATCCGAGGGCGAAGGTGCTGTTACTGAGGCCATCAGCGACGACGGAGTCGTTGATGATGGTGAGGATTCTTATTCGGAACCGCCTGAGGAGGCAAAGGTTTTTGTCGGCAATTTGCCATATGACGTTGATAGTGAGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCAATGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCACAGCCAGAACGCCCCCCTCGCGTGTTTGAACCTGCTTTTAGAATGTATGTTGGTAACCTGCCATGGGATGTCGACAGTGCTCGTCTGGAGCAGGTTTTCAGTGAACATGGTAAGGTTGTGGAGGCTCGTGTGGTTTTCGACAGAGAGACTGGTCGTTCCCGTGGTTTTGGCTTCGTGACAATGTCTAGCCAAACTGAATTGGAAGATGCCATTGCAGCCACCGATGGACAGACTCTGGATGGGAGAACGATCAGAGTAAATGTAGCTGAGGAAAGACCCAGGCGCAGTGCCTTCTGA 984 0.4909 MSSATHHLLKPFSIPNGSPISLPTIFSTKTPHSYLPIPPHKPIKLLLSCSQSSLFSPSLFLKSKTLSSSVVTFVAQTSDWAQQEEDNTVIIEEEQEEKVTWENEEVEGPDAQASDWESEGEGAVTEAISDDGVVDDGEDSYSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPERPPRVFEPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVAEERPRRSAF* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0960 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 226 IPR000504 GO:0003723
Vvi17g0960 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 320 IPR000504 GO:0003723
Vvi17g0960 327 FunFam 31 kDa ribonucleoprotein, chloroplastic 75 231 - -
Vvi17g0960 327 SUPERFAMILY RNA-binding domain, RBD 234 325 IPR035979 GO:0003676
Vvi17g0960 327 Gene3D - 231 326 IPR012677 -
Vvi17g0960 327 Gene3D - 74 230 IPR012677 -
Vvi17g0960 327 SUPERFAMILY RNA-binding domain, RBD 143 236 IPR035979 GO:0003676
Vvi17g0960 327 CDD RRM2_NsCP33_like 243 318 - -
Vvi17g0960 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 219 IPR000504 GO:0003723
Vvi17g0960 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 314 IPR000504 GO:0003723
Vvi17g0960 327 SMART rrm1_1 149 222 IPR000504 GO:0003723
Vvi17g0960 327 SMART rrm1_1 243 316 IPR000504 GO:0003723
Vvi17g0960 327 PANTHER OS02G0815200 PROTEIN 36 323 - -
Vvi17g0960 327 MobiDBLite consensus disorder prediction 97 114 - -
Vvi17g0960 327 FunFam 31 kDa ribonucleoprotein, chloroplastic 232 326 - -
Vvi17g0960 327 MobiDBLite consensus disorder prediction 97 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0960 Vvi-Chr17 11462903 11465940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0960 150 327 Eukaryotic Initiation Factors Gene Family AT3G16380 24.157 1.75e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0960 - - vvi:100257045 561.607