Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g0960 | ATGTCGTCTGCAACTCACCATCTCTTGAAGCCCTTCTCAATCCCAAATGGGTCTCCAATCTCTCTTCCCACCATCTTCTCCACCAAAACCCCACATTCATATCTGCCAATTCCTCCTCACAAACCCATTAAGCTTCTCTTATCATGCTCTCAATCTTCACTCTTTTCCCCATCTTTGTTTCTTAAGAGCAAGACCCTTTCTTCTTCTGTAGTCACCTTCGTTGCCCAGACCTCGGACTGGGCTCAGCAGGAAGAAGACAACACAGTGATAATTGAAGAAGAGCAGGAAGAGAAGGTCACTTGGGAAAATGAAGAGGTTGAGGGGCCTGATGCCCAAGCATCCGATTGGGAATCCGAGGGCGAAGGTGCTGTTACTGAGGCCATCAGCGACGACGGAGTCGTTGATGATGGTGAGGATTCTTATTCGGAACCGCCTGAGGAGGCAAAGGTTTTTGTCGGCAATTTGCCATATGACGTTGATAGTGAGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCAATGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCACAGCCAGAACGCCCCCCTCGCGTGTTTGAACCTGCTTTTAGAATGTATGTTGGTAACCTGCCATGGGATGTCGACAGTGCTCGTCTGGAGCAGGTTTTCAGTGAACATGGTAAGGTTGTGGAGGCTCGTGTGGTTTTCGACAGAGAGACTGGTCGTTCCCGTGGTTTTGGCTTCGTGACAATGTCTAGCCAAACTGAATTGGAAGATGCCATTGCAGCCACCGATGGACAGACTCTGGATGGGAGAACGATCAGAGTAAATGTAGCTGAGGAAAGACCCAGGCGCAGTGCCTTCTGA | 984 | 0.4909 | MSSATHHLLKPFSIPNGSPISLPTIFSTKTPHSYLPIPPHKPIKLLLSCSQSSLFSPSLFLKSKTLSSSVVTFVAQTSDWAQQEEDNTVIIEEEQEEKVTWENEEVEGPDAQASDWESEGEGAVTEAISDDGVVDDGEDSYSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPERPPRVFEPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVAEERPRRSAF* | 328 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g0960 | 327 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 148 | 226 | IPR000504 | GO:0003723 | |
Vvi17g0960 | 327 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 242 | 320 | IPR000504 | GO:0003723 | |
Vvi17g0960 | 327 | FunFam | 31 kDa ribonucleoprotein, chloroplastic | 75 | 231 | - | - | |
Vvi17g0960 | 327 | SUPERFAMILY | RNA-binding domain, RBD | 234 | 325 | IPR035979 | GO:0003676 | |
Vvi17g0960 | 327 | Gene3D | - | 231 | 326 | IPR012677 | - | |
Vvi17g0960 | 327 | Gene3D | - | 74 | 230 | IPR012677 | - | |
Vvi17g0960 | 327 | SUPERFAMILY | RNA-binding domain, RBD | 143 | 236 | IPR035979 | GO:0003676 | |
Vvi17g0960 | 327 | CDD | RRM2_NsCP33_like | 243 | 318 | - | - | |
Vvi17g0960 | 327 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 150 | 219 | IPR000504 | GO:0003723 | |
Vvi17g0960 | 327 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 245 | 314 | IPR000504 | GO:0003723 | |
Vvi17g0960 | 327 | SMART | rrm1_1 | 149 | 222 | IPR000504 | GO:0003723 | |
Vvi17g0960 | 327 | SMART | rrm1_1 | 243 | 316 | IPR000504 | GO:0003723 | |
Vvi17g0960 | 327 | PANTHER | OS02G0815200 PROTEIN | 36 | 323 | - | - | |
Vvi17g0960 | 327 | MobiDBLite | consensus disorder prediction | 97 | 114 | - | - | |
Vvi17g0960 | 327 | FunFam | 31 kDa ribonucleoprotein, chloroplastic | 232 | 326 | - | - | |
Vvi17g0960 | 327 | MobiDBLite | consensus disorder prediction | 97 | 119 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi17g0960 | Vvi-Chr17 | 11462903 | 11465940 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi17g0960 | 150 | 327 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 24.157 | 1.75e-08 | 53.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g0960 | - | - | vvi:100257045 | 561.607 |