Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0948 ATGGCTTCGTGGGTGAACTTCATCAATGGTTTGGATGCAAAAGTGGAGAAAGTGGCCAAAGAGTTTGATAGATTTCTTGATGAAGTGGTGAAAGAGCACGTGGAGAGAAGGAAAAGAGGTGTAGATGAGGAAGTGAAGGATTTTGTGGACGTTTTGCTTGGCATTCAGGAGGATAATGTCACAGGCGTTGCCATAACTGGAGTTTGCATCAAAGCTCTGACTCTGGACATGTTTGCTGCTGGAAGTGATACTACATACACGGTCCTAGAGTGGGCAATGACAGAGCTCTTGAGGCACCCACAAGTCATGAGGCAACTTCAGAATGAGGTCCGAGGAATTGCTCAAGGCAAACTCCTCATAACTGAAGATGACTTGGACAAAATGCAATATTTGAAGGCAGTGATCAAAGAGACTCTCAGACTATACCCTCCAATCCCACTACTAGTTCCCAGAGAATCCACCCGCGACGCCAAAATAATGGGCTACGACATTGCAGCACGGACACAAGTCATTACCAATGTATGGGCAATTGGGAGAGATCCACTGCTGTGGGATGAGGCCGAGGAGTTTCGGCCAGAAAGGTTCTTGAACTCTTCTATAGATTTCAGGGGGCAAGACTTTGAGTTGATCCCATTTGGATCTGGCCGGAGAGGTTGCCCGGGAACTCTGTTCGCGGCAATGGCAATTGAGGTTGTGTTAGCAAATCTTGTTCATCGGTTTGATTGGGAAGTGGGTGGTGGAGGTAGAAGGGAGGATTTGGATATGACTGAATGCACTGAATTTTTTTCTTCTGTTTTTATACCTAGAATAATAATAAATATTCTTTTAATTTGTGCTTTAATTTTATATTCTAAAATTATATTCAAAATGCTCTAA 876 0.4372 MASWVNFINGLDAKVEKVAKEFDRFLDEVVKEHVERRKRGVDEEVKDFVDVLLGIQEDNVTGVAITGVCIKALTLDMFAAGSDTTYTVLEWAMTELLRHPQVMRQLQNEVRGIAQGKLLITEDDLDKMQYLKAVIKETLRLYPPIPLLVPRESTRDAKIMGYDIAARTQVITNVWAIGRDPLLWDEAEEFRPERFLNSSIDFRGQDFELIPFGSGRRGCPGTLFAAMAIEVVLANLVHRFDWEVGGGGRREDLDMTECTEFFSSVFIPRIIINILLICALILYSKIIFKML* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0948 291 PRINTS P450 superfamily signature 133 144 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g0948 291 PRINTS P450 superfamily signature 219 230 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g0948 291 PRINTS P450 superfamily signature 210 219 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g0948 291 PRINTS P450 superfamily signature 80 97 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g0948 291 SUPERFAMILY Cytochrome P450 6 262 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g0948 291 PANTHER CYTOCHROME P450 71B11-RELATED 3 259 - -
Vvi17g0948 291 PRINTS E-class P450 group I signature 219 242 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g0948 291 PRINTS E-class P450 group I signature 132 150 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g0948 291 PRINTS E-class P450 group I signature 173 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g0948 291 PRINTS E-class P450 group I signature 89 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g0948 291 PRINTS E-class P450 group I signature 69 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g0948 291 PRINTS E-class P450 group I signature 209 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g0948 291 Pfam Cytochrome P450 9 256 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g0948 291 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 212 221 IPR017972 GO:0005506|GO:0016705
Vvi17g0948 291 FunFam Predicted protein 78 267 - -
Vvi17g0948 291 Gene3D Cytochrome P450 1 264 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0948 Vvi-Chr17 11203028 11204433 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0948 3 259 Cytochrome P450 AT3G48270 51.163 1.96e-92 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0948 - - vvi:100246781 495.738