Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0943 ATGGAGATGGTGGAGCGCGTGACCGAGTTTCCTCACACGCACATGGATCGCCGGCCGAGGAAGAGGCCGCGTTTGGGATGGGATGTTCTTCCTCAGGCTCCGAAGGCTCAGCTAGGGATGTTTTGTGGACAAGAGGTTGGGAATGTGGCAAGCTTTGCACCTTCAAAGGCACACTCCGACCAAACTACTAGTTCTATGTTTGTAAAGGGAGTAGCTCGAAATGGTTCTCCCCCATGGCGAGAAGATGACAAAGATGGCCATTACATATTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATCAACAGCAAGATGGGCGAAGGAACCTTTGGTCAGGTTTTGGAATGCTGGGACAGAGAGAGGAAGGAAATGGTTGCCGTCAAAATTGTCCGTGGTATTAAGAAGTATCGTGAGGCTGCCATGATTGAAATTGAAGTCTTACAACAGCTTGCTAAACATGACAAGGGTGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTGTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCATTTATGCATGATTTACGCCTCATACATACGGATTTGAAGCCTGAGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAGGTTTCATCCCGTTCACCCAAGGATGGTTCTTACTTTAAGAGAGTACCAAAATCAAGTGCTATTAAAGTGATTGATTTTGGAAGCACAACATATGAGCGACAAGATCAGAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGGGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGGTGGAGTTATGCACGGGAGAAGCATTGTTTCAGACTCATGAGAATCTGGAGCACCTTGCCATGATGGAAAGGGTGTTGGGTCCACTGCCGCAGCACATGCTGAAGAGAGTAGACCGACATGCAGAGAAGTATGTACGAAGGGGTAGATTGGACTGGCCAGAAGGTGCGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTGTTGCAAGGTCTTCTTAGATATGACCCTTCAGACCGATTGACAGCCCTTGGAGCCCTAAGGCATCCCTTCTTTACAAGGGATCACCTCAGGAGGTCTTGA 1308 0.4564 MEMVERVTEFPHTHMDRRPRKRPRLGWDVLPQAPKAQLGMFCGQEVGNVASFAPSKAHSDQTTSSMFVKGVARNGSPPWREDDKDGHYIFALGENLTSRYKINSKMGEGTFGQVLECWDRERKEMVAVKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECVAFMHDLRLIHTDLKPENILLVSPEYVKVPDYKVSSRSPKDGSYFKRVPKSSAIKVIDFGSTTYERQDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGRLDWPEGATSRESIKAVLKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSDRLTALGALRHPFFTRDHLRRS* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0943 435 Gene3D Phosphorylase Kinase; domain 1 87 180 - -
Vvi17g0943 435 FunFam Serine/threonine-protein kinase AFC2 176 427 - -
Vvi17g0943 435 ProSiteProfiles Protein kinase domain profile. 100 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0943 435 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 430 - -
Vvi17g0943 435 FunFam Serine/threonine-protein kinase AFC2 87 180 - -
Vvi17g0943 435 SUPERFAMILY Protein kinase-like (PK-like) 87 431 IPR011009 -
Vvi17g0943 435 Pfam Protein kinase domain 100 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0943 435 Gene3D Transferase(Phosphotransferase) domain 1 154 427 - -
Vvi17g0943 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Vvi17g0943 435 MobiDBLite consensus disorder prediction 1 22 - -
Vvi17g0943 435 SMART serkin_6 100 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0943 435 CDD PKc_CLK 87 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0943 Vvi-Chr17 11172609 11176644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0943 105 427 Core Cell Cycle Gene Families AT1G76540 25.816 1.48e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vvi17g0943 Pkinase 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0943 K08287 - vvi:100263937 897.116