Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0942 ATGGCTTCTCTCTCAAAATTCGTCTGTATTTTCACTCTAATTCTTATGATCAAACCTATGTTTTCTCAGCAATCTTATGACAAGTCTAACTGCACTTCAGAACCCCAACTTCCTGGTTCCAACTACATATGCAACCCCAAGAAACTTCCATGCCAAACCTACATAGTCTACAGAGCCCAACACAATTTTCGGACGCTGTCTTCCATATCCTCTCTCTTCAATGCAAATATATCCGAACTCTTCACTACCAACAACATGGTTGAAGCTAATTCCAGCAATCTCAGGCCTGGTCAGGAGATCATCATCCCAGTTACCTGCTCTTGTCCTGATCGGTTCTCTGAGGCAATGTTCATTTACAACTGTTCACATTCAGATTCATTGCTTATAATTGCTTGTACAGTTTTTGAAGGATTGGTGAAAGCCCAGAGTCTCATTGAGGAGAACCCGGATTTTGGAGGCGATAATCCTGGTGATTTAACAATAAAGGTACCTGTTCGTTGTGCATGTCTTGCTAAATTTGAAAGAGACAATGGTGTAAGGTACCTTGTGACATATCCAGTGATTCAGGGTGATAGTACAGACTTGATGGCACGTAAATTTGGGGTGCCTGAAGAAATGATTCGGGCTGCTAATAAATTAGACCGTTATGCAGCTATTTACCCTCAAACCACATTGCTCATTCCCACAAAGGATGTCCCAGTGGTGAATTGGGAGATTGATTCTCTCTATGAAAATCCGCCTCCTAGTCCTCAGGAAGCTGTTCCTTTTAGGAAAGTCAAACACGGCGCAGAACCAAATAACAAGAATTCACACCTACTTCTTGGATTCGGCATCTTCATTGTGATAGTTCTAATGGTTGTGGCTTCTGGGGGTTCCATTTTCTTTTGGAAAAGATATCATCAGAGGTTCCAACCTTCGGTGGCTAGAAGTTCTCAACTGTCAAATTTGTCGCCTGATTTTCTAGATGGGATGTCCAAGCTGAAGCACTCATTGATGAGTTTCAGCTTAGAGGAGCTGAGGAATGCAACCGAGGACTTTGGCAAGGCATCTATCATTGGTAGAGCAGTGTATCAGGGAAAGATTAGGGGTAGCATCATGGCCATCAAGCAGATGGATTCAGAGGAAGGAGCCCGCCATGTCATTGAGATATTGACGAGGCTTAATCATGTCAACATGGTGAAGCTAGAGGGATGCTGCTATGGAACCAGGCCCTATCTTGTGTTTGAGTTTGCAGAGAATGGTAGCTTAAGGGACTGCTTGTCCAATCCAAAGATAGCTAGGCAGCTCACATGGAAAAAGAGAATGCAGATTGCTTTTGATCTCGCTGTGGGTCTTCACTACATTCATTACTACACCAAGCCCGGTTATGTTCATAGAAACATAAACAGCAGAAGTGTGCTCATAACCATGGATTGGAGGGCCAAGATTTCCGGGTTTAGAATGGCAAGGGCACTGCTGTACAGTGAAGAAGAGAGGGAGACGGAGATTATTAATGAATCTGTGATAGTGGGGAAAAAGGGGTATTTAGCTCCAGAGTACCTGAGCCGTGGGCTAGTTACAACTAAGATGGATATATATGCATTTGGGGTTGTTTTGCTTGAGCTGATATCTGCCAAAGAAGCTATTACAAAGGAGAATTTCTTGAAGGATTCTGCAAAGTTTCTGATAGATGGAGGGCTAGAAGGGTCTTCAGAGTACTTGGAGAAGTTGAAGAAATTCACTGATCCTGTTCTGCAGGGGGATTACCCTTTGAGTGATGCCTTGTGTCTGGCACTCTTGGCCAAGTGTTGCACGGAGGAGGAACCCCATCAAAGACCCACGATAAATGATCTTTTGAAAGCTCTTTCCAGAATCCTATGA 1860 0.4355 MASLSKFVCIFTLILMIKPMFSQQSYDKSNCTSEPQLPGSNYICNPKKLPCQTYIVYRAQHNFRTLSSISSLFNANISELFTTNNMVEANSSNLRPGQEIIIPVTCSCPDRFSEAMFIYNCSHSDSLLIIACTVFEGLVKAQSLIEENPDFGGDNPGDLTIKVPVRCACLAKFERDNGVRYLVTYPVIQGDSTDLMARKFGVPEEMIRAANKLDRYAAIYPQTTLLIPTKDVPVVNWEIDSLYENPPPSPQEAVPFRKVKHGAEPNNKNSHLLLGFGIFIVIVLMVVASGGSIFFWKRYHQRFQPSVARSSQLSNLSPDFLDGMSKLKHSLMSFSLEELRNATEDFGKASIIGRAVYQGKIRGSIMAIKQMDSEEGARHVIEILTRLNHVNMVKLEGCCYGTRPYLVFEFAENGSLRDCLSNPKIARQLTWKKRMQIAFDLAVGLHYIHYYTKPGYVHRNINSRSVLITMDWRAKISGFRMARALLYSEEERETEIINESVIVGKKGYLAPEYLSRGLVTTKMDIYAFGVVLLELISAKEAITKENFLKDSAKFLIDGGLEGSSEYLEKLKKFTDPVLQGDYPLSDALCLALLAKCCTEEEPHQRPTINDLLKALSRIL* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0942 619 Pfam Protein tyrosine and serine/threonine kinase 367 614 IPR001245 GO:0004672|GO:0006468
Vvi17g0942 619 ProSiteProfiles LysM domain profile. 183 227 IPR018392 -
Vvi17g0942 619 Gene3D LysM domain 179 233 IPR036779 -
Vvi17g0942 619 Pfam LysM domain 186 228 IPR018392 -
Vvi17g0942 619 Pfam LysM domain 65 103 IPR018392 -
Vvi17g0942 619 Gene3D Transferase(Phosphotransferase) domain 1 411 619 - -
Vvi17g0942 619 Gene3D Phosphorylase Kinase; domain 1 322 410 - -
Vvi17g0942 619 SMART LysM_2 184 228 IPR018392 -
Vvi17g0942 619 SMART LysM_2 53 103 IPR018392 -
Vvi17g0942 619 CDD LysM 183 227 IPR018392 -
Vvi17g0942 619 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 8 619 - -
Vvi17g0942 619 ProSiteProfiles LysM domain profile. 52 102 IPR018392 -
Vvi17g0942 619 FunFam PTI1-like tyrosine-protein kinase 3 411 619 - -
Vvi17g0942 619 SUPERFAMILY Protein kinase-like (PK-like) 328 615 IPR011009 -
Vvi17g0942 619 Gene3D LysM domain 64 114 IPR036779 -
Vvi17g0942 619 ProSiteProfiles Protein kinase domain profile. 279 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0942 Vvi-Chr17 11170009 11171868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0942 1 619 Receptor kinase-like Gene Family AT2G23770 32.399 2.87e-81 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vvi17g0942 PK_Tyr_Ser-Thr 6.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0942 - - vvi:100248488 1217.99