Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0932 ATGCCCCAGGTTTTGTCCTCCGAGCAAGACCCTGATGATCCCGATACTGAATTCGTAGAGATTGATCCAACTGGGAGATATGGTCGGTATAAGGAGGTTCTAGGAAAAGGGGCTTTCAAGAAAGTATATAGAGCATTTGATGAATTGGAAGGAATTGAAGTAGCTTGGAATCAGGTTAAGGTGGCAGATCTATTACGGAACTCAGAAGAGTTCGAGCGTCTGTATTCAGAAGTTCATTTGCTCAAGACTCTGAAGCATAAGAACATAATTAAGTTTTATATTTCGTGGGTCGATACAAGGAATGAGAATATCAATTTTATTACAGAGATTTTCACCTCAGGCACATTGAGGCAGTATCGAAAGAAACATAAGCATGTTGATTTGAGGGCTCTGAAGAAATGGTCTAGGCAGATTCTGGAGGGTCTTCTCTATCTTCACAGTCATGACCCTCCTGTTATTCATCGGGACCTGAAGTGTGACAACATTTTTGTTAATGGAAACCAAGGAGAGGTGAAAATTGGGGACTTAGGACTGGCTGCCATTCTTCGCCAGGCTCGATCAGCTCATAGTGTCATTGGTACTCCTGAGTTCATGGCACCTGAGCTTTACGAGGAGGAATACAATGAGCTTGTAGACATTTATGCCTTTGGGATGTGCTTGCTGGAGTTGGTGACCTTTGAGTACCCATATGTTGAATGTGCCAATGCTGCTCAAATATACAAGAAAGTGACATCAGGAATCAAACCAGCATCATTAGCAAAAGTGAAAGACCCTAGAGTTAGAGCATTTATAGATAAATGTATTGCAAATGTCTCTGATCGGTTGTCTGCCAAGGAACTCTTGAGGGATCCTTTTCTCCAATCAGATGAGGAAAATGGAAGTGTAGGCCGTTCTTTACAACCCCATCCTCATCATTCAGGTAGTCATGACCACTTCAATACTGGTACAAGTTCTAAGGTCTCTCTGCCTGAGTCAAGTCGAGACTTCAAGGTGCAAGGTCAAAGGAGAGATGTCAACACAATATTTCTAAAATTACGAATTGCAGATTCTAAAGGTCATATTCGCAACATCCACTTCCCATTTGATATTGGGGCTGATACAGCAATTTCTGTTGCTGGTGAAATGGTTGAAGAGTTGGACTTGACAGATCAAGATGTTTCAACCATTGCTGCAATGATTGACTCAGAAATTCGGTCCATCATTTCAGATTGGCCCCCATCAAGAGAAGTTTTTGGGGATAATTTGAGCACAGAGGTTGCAATTTCTGATATCTGTCCCCCTGAAAGTGAGGGTGATGCTTTGCCCTTGATGAATGAGTCTGCTACTTCTTCTTGTGGCCTTGTCCTGGAACGGTTGCCTTCAGGTCGGAGGTACTGGTCCGACTCACCCAAGGCAGTTGGTGGAAACTCTCCTATTAGACCTGCCTTTTCAAACTTGTCTTCTCAGGTTGATTCGGTAACTACTGAAGGTAGGTTTAGTGAACTTAATGAGCAATCTCTTGCTAGTCCTAGAGATGGAGATAAGTTAAATACTGCTGCTTCACTTGATAAGCGGGAGGATGAACGTGTATGTGGTGATGATGACGTTGAAGAGAAAGAAGCTAGTATATCTGCTGAAACCCAGTTTAGTGATCAAAACGATGTGGCTGTAGAATTACTTGGTGGCTATAGAGCACCTTCATGGGGAGGGAACTGTAAAATATTGAGGGAAACTGAATTAGGAGACGCCAAAGTTATTGTGGAGAAACTTAAGCATTTGTTTGTAAAACAACAAAAGGAGTTAGACGAACTAAAGAGGAAGCATGAATTGGCCATATTAGATCTTGTGAAGGAACTTCCTCCAGACATCCGTAACAAAGTTTCTAGCCTTTGTAACCTGAAGATCTCTGGCTCCTTTTCAAAAATGGAACCAATGTCATCAGAAGTTTCCAACTTGGCCGTGTATAACAATCTAGATACTTATTCCATTGGACCAACTAATGTCAAACTTAGTCTCCCAAAAAAAGGTTAA 2010 0.4194 MPQVLSSEQDPDDPDTEFVEIDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVADLLRNSEEFERLYSEVHLLKTLKHKNIIKFYISWVDTRNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYVECANAAQIYKKVTSGIKPASLAKVKDPRVRAFIDKCIANVSDRLSAKELLRDPFLQSDEENGSVGRSLQPHPHHSGSHDHFNTGTSSKVSLPESSRDFKVQGQRRDVNTIFLKLRIADSKGHIRNIHFPFDIGADTAISVAGEMVEELDLTDQDVSTIAAMIDSEIRSIISDWPPSREVFGDNLSTEVAISDICPPESEGDALPLMNESATSSCGLVLERLPSGRRYWSDSPKAVGGNSPIRPAFSNLSSQVDSVTTEGRFSELNEQSLASPRDGDKLNTAASLDKREDERVCGDDDVEEKEASISAETQFSDQNDVAVELLGGYRAPSWGGNCKILRETELGDAKVIVEKLKHLFVKQQKELDELKRKHELAILDLVKELPPDIRNKVSSLCNLKISGSFSKMEPMSSEVSNLAVYNNLDTYSIGPTNVKLSLPKKG* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0932 669 MobiDBLite consensus disorder prediction 310 328 - -
Vvi17g0932 669 Coils Coil 580 600 - -
Vvi17g0932 669 Gene3D - 339 418 - -
Vvi17g0932 669 MobiDBLite consensus disorder prediction 291 329 - -
Vvi17g0932 669 CDD STKc_WNK 26 286 - -
Vvi17g0932 669 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
Vvi17g0932 669 MobiDBLite consensus disorder prediction 487 505 - -
Vvi17g0932 669 MobiDBLite consensus disorder prediction 1 21 - -
Vvi17g0932 669 FunFam Probable serine/threonine-protein kinase WNK3 339 430 - -
Vvi17g0932 669 FunFam probable serine/threonine-protein kinase WNK9 111 291 - -
Vvi17g0932 669 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0932 669 MobiDBLite consensus disorder prediction 487 528 - -
Vvi17g0932 669 MobiDBLite consensus disorder prediction 510 528 - -
Vvi17g0932 669 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0932 669 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 544 - -
Vvi17g0932 669 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0932 669 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 343 397 IPR024678 GO:0004674|GO:0005524
Vvi17g0932 669 SUPERFAMILY Protein kinase-like (PK-like) 30 319 IPR011009 -
Vvi17g0932 669 FunFam Probable serine/threonine-protein kinase WNK1 13 109 - -
Vvi17g0932 669 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Vvi17g0932 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0932 Vvi-Chr17 10966738 10980320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0932 18 404 MAP Kinase Kinase Kinase AT3G22420 56.422 2.53e-173 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vvi17g0932 Pkinase 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0932 K08867 - vvi:100250110 1335.09