Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0925 ATGAGCGAGCCGATGGAGATCTCTCTGCAAAATGCCACCGTCGGCGACTCCTCAGATCAGAACGGAGTTTCAGAGTCCATTCCTTCTCCCATTCTCACCCAAGAAAAAGTTCTTGTTTCGGTTGAAGTTTGCTTGAAAGCCTCTAGCACAGCCAGGAGTGATGATGTCCGGTCAGCTGTTGAGAGAATGCTTGAAAATAGGAGTTTGAGCTATACTGATGGTTCAGTTCCAGTGTCTCTTGATGATCCATTCCTTGTGGAAAATGTACAAAGAATCTGTATTTGCGAAACAGATGAATGGGTGGAGAAACATGATGTCCTTCTGTTCTGGCAAGTCAAACCTGTTGTCCATGTCTTTCAGCTTAGTGAGGAGGGACCATGCGAAGAATCAAGTGGGGATGGTCAGCTTTCTATCTTCAATGAATGGATTCTTCCTGCCAAGGAATTTGATGGCCTGTGGGAAAGCTTAATCTATGAGCCGGGTCTCAAGCAAAGGTTGTTGCGGTATGCGGCAAGCGCTTTGCTCTTTACTGAGAAAGGTGTCAATCCTTTCCTTGTATCATGGAACCGCATCATTCTTTTACATGGTCCTCCAGGCACGGGGAAGACATCTTTATGTAAAGCATTGGCTCAAAAATTATCAATACGTTTTAACACCAGATACCCACAGTGCCAACTGGTGGAAGTTAATGCGCATTCTTTGTTTAGTAAATGGTTTTCTGAAAGTGGAAAGTTGGTTGCAAAATTATTCCAAAAAATTCAAGAAATGGTTGAGGAAGAAACCAATCTGGTATTTGTTTTGATTGATGAAGTTGAAAGCCTAGCTGCTGCTAGAAAGGCTGCTTTATCTGGCTCCGAGCCTTCAGATTCTATTCGGGTTGTGAATGCTCTACTGACTCAATTGGACAAACTAAAATCTTCACCAAATGTGATAATTCTGACAACTTCCAATATTACTGCAGCTATAGATATCGCTTTTGTTGATCGAGCTGACATCAAAGCATATGTGGGACCTCCAACAATTCATGCAAGATATGAAATACTGAGATCCTGCCTGCAGGAACTTGTACGAGCAGGAATATTGACTAATTCTCAGGAATGTGATCGCCTTTCGCTTCTGAGTTACACTGGTCTGAAAGAGAAGTTGAATGTGGCACAGATAGAGGAGCCTGGAAATTCACATCTATGTAAACAATTGCTGGAAGCTGCAGAGGCATGTGAGGGTTTGAGTGGAAGATCATTAAGAAAGCTTCCCTTCTTAGCCCATGCTGCTCTTGCCAATCCATACAGTTGTGACCCTAGCAAGTTCTTGTGTACAATGACAGACACAGCTAAAAGGGAGTGTGCCGGGTTACTGTCAGAATCATGA 1368 0.432 MSEPMEISLQNATVGDSSDQNGVSESIPSPILTQEKVLVSVEVCLKASSTARSDDVRSAVERMLENRSLSYTDGSVPVSLDDPFLVENVQRICICETDEWVEKHDVLLFWQVKPVVHVFQLSEEGPCEESSGDGQLSIFNEWILPAKEFDGLWESLIYEPGLKQRLLRYAASALLFTEKGVNPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNTRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEETNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQLDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTIHARYEILRSCLQELVRAGILTNSQECDRLSLLSYTGLKEKLNVAQIEEPGNSHLCKQLLEAAEACEGLSGRSLRKLPFLAHAALANPYSCDPSKFLCTMTDTAKRECAGLLSES* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0925 455 FunFam pachytene checkpoint protein 2 homolog 132 354 - -
Vvi17g0925 455 MobiDBLite consensus disorder prediction 1 26 - -
Vvi17g0925 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 421 IPR027417 -
Vvi17g0925 455 Gene3D - 138 355 IPR027417 -
Vvi17g0925 455 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 306 320 IPR001270 GO:0005524
Vvi17g0925 455 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 192 210 IPR001270 GO:0005524
Vvi17g0925 455 CDD RecA-like_Pch2-like 139 336 - -
Vvi17g0925 455 ProSitePatterns AAA-protein family signature. 310 329 IPR003960 GO:0005524|GO:0016887
Vvi17g0925 455 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 32 449 IPR044539 -
Vvi17g0925 455 Pfam ATPase family associated with various cellular activities (AAA) 192 337 IPR003959 GO:0005524|GO:0016887
Vvi17g0925 455 SMART AAA_5 188 340 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0925 Vvi-Chr17 10885644 10892634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0925 192 355 Calmodulin-binding Proteins AT3G56690 33.735 1.80e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0925 K22399 - vvi:100248522 896.345