Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0922 ATGGAATCTGGAAATAGGTTCTACTCTGTTGATGAGTTTCACTTAGACCCCAAATGGCTGATTGATCCAAAGCATCTTTTTGTTGGGCCAAGAATTGGAGAAGGCGCTCATGCCAAAGTATATGAAGGAAAATATAAAAATCAGAATGTCGCCATCAAAATTGTTCATAGAGGAGAAACTCCAGAGGAGATCACCAAGAGAGAAGCACGATTCGCAAGAGAGGTCTCAATGCTTTCAAGAGTTCAGCATAAAAACCTGGCAAAGTTTATTGGTGTCTGCAAGGAGCCTGTAATGGTGATAGTCACCGAGCTTTTATTGGGAGGGACGTTGCGTAAATATTTGCTAAACATGCGACCAAGATGCTTGGATGCTCGAATTGCAGTTGGTTTTGCTCTTGATATTGCTCGAGCAATGGAATGCCTGCACTCTCATGGGATCATACATCGTGATCTGAAACCTGAGAACTTAATCTTGACTGCAGACCACAAAACAGTTAAACTGGTGGATTTTGGTTTAGCAAGGGAAGAGTCACTGACAGAGATGATGACTGCTGAAACAGGGACTTACCGTTGGATGGCTCCAGAGTTGTACAGTACTGTGACATTAAGGCATGGAGAGAAGAAGCACTACAACAACAAAGTGGATGCTTATAGCTTTGCCATTGTCTTGTGGGAGCTTTTACATAACAAGTTGCCGTTTGAAGGCATGTCTAATTTACAGGCAGCATATGCAGCTGCTTTTAAGAATGTGAGGCCCAGTGCTGAAAACCTCCCAGAGGAGTTGGCTATAATACTAACTTCATGTTGGAAGGAGGATCCTAACGCCAGACCGAACTTCAGCCAGATAGTCCAGATGCTCCTCCATTATCTTTCTACCATTTCACCTCCAGAACCTGCAATCCCTTCTCGGGTTTTCGCATCAGAAAACACCATCTTGCCACCTGAATCTCCAGGCACAAGCTCTTTGATGGCAGTACGTGATGACTCAGGGGAAACCCCCAAAGTGAAGATGGAGAACAAACCAAAAGGCTTCTTCTTTTGCTTTAACCAGTGCTATTAA 1059 0.4381 MESGNRFYSVDEFHLDPKWLIDPKHLFVGPRIGEGAHAKVYEGKYKNQNVAIKIVHRGETPEEITKREARFAREVSMLSRVQHKNLAKFIGVCKEPVMVIVTELLLGGTLRKYLLNMRPRCLDARIAVGFALDIARAMECLHSHGIIHRDLKPENLILTADHKTVKLVDFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRHGEKKHYNNKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENLPEELAIILTSCWKEDPNARPNFSQIVQMLLHYLSTISPPEPAIPSRVFASENTILPPESPGTSSLMAVRDDSGETPKVKMENKPKGFFFCFNQCY* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0922 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Vvi17g0922 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Vvi17g0922 352 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Vvi17g0922 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Vvi17g0922 352 FunFam Kinase suppressor of Ras 1 15 105 - -
Vvi17g0922 352 SUPERFAMILY Protein kinase-like (PK-like) 17 313 IPR011009 -
Vvi17g0922 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Vvi17g0922 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Vvi17g0922 352 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 21 287 - -
Vvi17g0922 352 Pfam Protein tyrosine and serine/threonine kinase 30 286 IPR001245 GO:0004672|GO:0006468
Vvi17g0922 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0922 352 Gene3D Transferase(Phosphotransferase) domain 1 107 297 - -
Vvi17g0922 352 PIRSF TyrPK_CSF1-R 114 329 - -
Vvi17g0922 352 PIRSF TyrPK_CSF1-R 1 126 - -
Vvi17g0922 352 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Vvi17g0922 352 CDD STKc_MAP3K-like 32 286 - -
Vvi17g0922 352 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0922 Vvi-Chr17 10875253 10877438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0922 9 352 MAP Kinase Kinase Kinase AT5G50180 81.977 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vvi17g0922 PK_Tyr_Ser-Thr 5.4e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0922 - - vvi:100243394 714.146