Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0912 ATGGGAGGGGATCTTGATTCCGCCAGTAACAGAATCATAAAGTTTCTCTACAGCTATGGCGGCAAGATTCTTCCTCGTCGCATCGATGGCAAGCTGCGGTACGTAGGTGGACATACTAGGGTTCTTGCTGTGGATCGATCTATTTCGTATGCAGAGCTGATGGTGAAGTTAGGGGAGTTGTGTGGATCGTCGGTGACTTTGAGGTGTCAGTTGCCTAAGGAGGATCTGGACGTGTTGGTTACGGTCACCAGCGATGAAGAACTCGCTAATGTAATTGATGAATACCATCGGGCTTCTTCGTCGTGTTCTAAGATCAGAGCCGTTCTTTCGCCGCCCAAATCTCTCAAAACTATTTCTCCGGTTTCATCAACTACGTCCAGCGTCGATTCCTCTGATTTCAGATCGATTACCGCAGTCTGCGCTCATCGTTCAGCCTCTCCGCCTATGCTGGCTCACCGTTATCCTGGTCCTCGTTCAGTATCTCCGACTACGACGGCGCATAGATGGTCCACCCGTATCTCGCCGCCAATAGAGAATCCCCTCTATGTCCGCTGGGATACGGCGAAGCTCTGTTACAATTCCTATCGCAATCCCTGTGACGTTGGTGGAAGCCATAGATATTACTGA 627 0.5024 MGGDLDSASNRIIKFLYSYGGKILPRRIDGKLRYVGGHTRVLAVDRSISYAELMVKLGELCGSSVTLRCQLPKEDLDVLVTVTSDEELANVIDEYHRASSSCSKIRAVLSPPKSLKTISPVSSTTSSVDSSDFRSITAVCAHRSASPPMLAHRYPGPRSVSPTTTAHRWSTRISPPIENPLYVRWDTAKLCYNSYRNPCDVGGSHRYY* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0912 208 SUPERFAMILY CAD & PB1 domains 29 117 - -
Vvi17g0912 208 CDD PB1_UP2 18 109 - -
Vvi17g0912 208 Gene3D - 31 111 - -
Vvi17g0912 208 SMART PB1_new 27 110 IPR000270 GO:0005515
Vvi17g0912 208 Pfam PB1 domain 28 105 IPR000270 GO:0005515
Vvi17g0912 208 PANTHER OS05G0427100 PROTEIN-RELATED 9 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0912 Vvi-Chr17 10770037 10770752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0912 6 94 MAP Kinase Kinase Kinase AT2G35050 52.809 9.11e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0912 - - vvi:100255423 404.445