LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g0910	ATGTTGCCCCTTCTCCTGGTTCCTCTCTTCACCTTCCTCTTTGTTTCACCTTCTTTGTCTGTTAATTTCCTCTACAACTCCTTCAATGCCTCCGATGCTTCCTACCTCGAGCTCATCAACGATGCCAGAGTTGAAGGTTCTGTTATCCGATTGACTAATGATTCGAATCAATTCTCCTTCGGGAGAGTCTTCTACCCAACTCGACTCACCATGAAACCCACCTCGAATTCCACCGCCGTCGCTTCATTTTCGACTTCCTTCGTCTTCTCTATCCTCCCTGATATCAGTGACAGTCCCGGCTTCGGCCTCGCTTTCGTCCTCTCCAACTCCACCTCACCTCCTGGAGCTCTCGCCAGCCAATACTTCGGCCTTTTTTCCAATGCCACCGTTCCTTCCGTTGCCCCTTTGCTTGCTGTTGAATTCGATACCGGTCAGAACCCGGAATTCAACGACATAGATGGTAATCATGTCGGGATCGACCTTAATAACATTGAATCTGAATCAGATGGTACTCAGACGGCCGGATACTATAATTCCTCCGGCGATTTTGTGGCGGTGGAGATGCGGAACGGCCAGAATATACGAGCTTGGATTGAATTCGATGGACCCCAATTCGAAATCAATGTCACAATTGCTCCTGTTGCAGTGTCCAAACCATCTAGGCCTTTGATCAGTTACAGAAATCCAAAGATTGCCAACTATGTATCAACAGAAATGTATGTGGGGTTTTCTGCATCGAAGACCAACTGGGTTGAGGCGCAGAGGATTTTAGCATGGAGTTTGAGCGATACTGGAGTTGCTGCAGATATCAATACCACGAATCTCCCAGTTTTCTCGCCTGAAACGGCTTCATCTTCATTGTCAGCTGGGGCAATTGCAGGAATCGCAATAGCTTCTGTTGTGTTTCTCCTCATCTGTTTATCTGGGGGTTACTGGTTTTGGAGGAAGACCAAGATAGAAGAGGAAGATGAGATTGAAGACTGGGAGCTCGAGTACTGGCCGCACAGATTCTCCTACGAGGAGCTGAAGCAAGCCACCGATGGATTCTCCAAGAATGAGCTTCTGGGGCTGGGTGGGTTCGGCAGGGTTTACAGAGGAACTCTCCCCAACAACACCCAAGTAGCTGTGAAGTGCGTAAACCACGATTCGAAGCAAGGGTTAAGAGAATTCATGGCTGAGATCGCCAGCATGGGCAGACTTCAACACATAAACCTCGTCCAAATGCGAGGTTGGTGCAGAAAAGGCAATGAATTGATGCTTGTCTACGACTTCATGCCCAATGGCAGCCTCAATCGGTGGATCTTCGATAACCCCAAGACGCTACTGGGCTGGGAAGGGCGGCGAAGAGTCCTCGCCGACGTTGCAGAGGGGTTAAACTACCTCCACCAGGGTTGGGACAAGGTGGTGATTCACAGAGACATCAAATCAAGCAACATCCTGTTGGATTCAGAGATGCGAGGCAGACTCGGAGACTTTGGCCTCGCAAAGCTTTACGAGCACGGCGCGGCTCCCAACACTACGAGAGTGGTGGGCACACTCGGGTACTTGGCACCGGAGCTGGCGACGGTGACCGCGCCGACGGCGGCGAGTGACGTCTACAGCTTTGGAGTGGTGGTACTGGAGGTCGCATGCGGGCGACGGCCGATAGAGACGTGGGCGGCGGAGGAGGAGCAGGTGTTGATCGATTGGGTGAGGGAGAAGTATCTGGATGGGAGGGTTTGTGAAGCGGCGGACAAGAGGATCGCCGGCCAGTACGTGGTGGAGGAGATGGAAAGAGTTTTGAAGCTGGGATTGGCTTGTTGCCACCCTGATCCACAGCACCGCCCGACCATGAAGGAGGTGGTGACGGTGTTGGTCGGCGAGGAGGCCGCGGCCGCTCCGGCGGCCGTGCTGTCGGAGTTGGCGCAGGCAGGTGAAAGTGTTGGTTGCAGTGGCGGTGATACGAACGCAGAGGAGCCGCCGCTCCAGTCCACTGTGTGA	1980	0.5288	MLPLLLVPLFTFLFVSPSLSVNFLYNSFNASDASYLELINDARVEGSVIRLTNDSNQFSFGRVFYPTRLTMKPTSNSTAVASFSTSFVFSILPDISDSPGFGLAFVLSNSTSPPGALASQYFGLFSNATVPSVAPLLAVEFDTGQNPEFNDIDGNHVGIDLNNIESESDGTQTAGYYNSSGDFVAVEMRNGQNIRAWIEFDGPQFEINVTIAPVAVSKPSRPLISYRNPKIANYVSTEMYVGFSASKTNWVEAQRILAWSLSDTGVAADINTTNLPVFSPETASSSLSAGAIAGIAIASVVFLLICLSGGYWFWRKTKIEEEDEIEDWELEYWPHRFSYEELKQATDGFSKNELLGLGGFGRVYRGTLPNNTQVAVKCVNHDSKQGLREFMAEIASMGRLQHINLVQMRGWCRKGNELMLVYDFMPNGSLNRWIFDNPKTLLGWEGRRRVLADVAEGLNYLHQGWDKVVIHRDIKSSNILLDSEMRGRLGDFGLAKLYEHGAAPNTTRVVGTLGYLAPELATVTAPTAASDVYSFGVVVLEVACGRRPIETWAAEEEQVLIDWVREKYLDGRVCEAADKRIAGQYVVEEMERVLKLGLACCHPDPQHRPTMKEVVTVLVGEEAAAAPAAVLSELAQAGESVGCSGGDTNAEEPPLQSTV*	660

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g0910	659	SUPERFAMILY	Protein kinase-like (PK-like)	327	618	IPR011009	-
	Vvi17g0910	659	CDD	lectin_legume_LecRK_Arcelin_ConA	21	265	IPR001220	GO:0030246
	Vvi17g0910	659	Gene3D	Transferase(Phosphotransferase) domain 1	425	630	-	-
	Vvi17g0910	659	CDD	STKc_IRAK	355	618	-	-
	Vvi17g0910	659	SUPERFAMILY	Concanavalin A-like lectins/glucanases	20	278	IPR013320	-
	Vvi17g0910	659	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	469	481	IPR008271	GO:0004672\|GO:0006468
	Vvi17g0910	659	Pfam	Legume lectin domain	21	275	IPR001220	GO:0030246
	Vvi17g0910	659	Gene3D	-	19	277	-	-
	Vvi17g0910	659	ProSiteProfiles	Protein kinase domain profile.	349	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi17g0910	659	Gene3D	Phosphorylase Kinase; domain 1	334	424	-	-
	Vvi17g0910	659	FunFam	L-type lectin-domain containing receptor kinase S.4	19	269	-	-
	Vvi17g0910	659	ProSitePatterns	Protein kinases ATP-binding region signature.	355	377	IPR017441	GO:0005524
	Vvi17g0910	659	FunFam	L-type lectin-domain containing receptor kinase S.4	425	630	-	-
	Vvi17g0910	659	SMART	serkin_6	349	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi17g0910	659	ProSitePatterns	Legume lectins beta-chain signature.	137	143	IPR019825	-
	Vvi17g0910	659	FunFam	L-type lectin-domain containing receptor kinase S.1	334	424	-	-
	Vvi17g0910	659	Pfam	Protein kinase domain	350	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi17g0910	659	PANTHER	-	42	622	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g0910	Vvi-Chr17	10749584	10751563	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi17g0910	16	620	Receptor kinase-like Gene Family	AT1G15530	70.376	0.0	828

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vvi17g0910		Pkinase	1.7e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g0910	-		-	vvi:100246642	1266.91