Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0907 ATGGGAGTGGCTTTAGAGGATAATGATGACTATGGAACTCCACCCTTCAATGCAGAACAGCTTGTGAGTCTTCATGGGAAGACTACGTTGACTGCTGCTATTACAAGGGTGCTGGCAGAGGAAGGAAAAGCAAAGGTAGTTGCCCTCGATGAAATTGACAAGGCTCCTAAAGAGAAGAAGAGAGGAATTACAATTGCAATGGCCCATGTCGAGTATGAGACTGCTAAGCGGCACTATGCCCATGTGGACTGTCCAGGACATGCGGATTATGAGAAGAATATGATTACTGGAGCTGCCCAAATGGATGTTAGTATTCAGGTCGTTTTTGCTCCTAATGGACCCATGCCACGGACAAAGGAACACATTCTACTTGCGCGCCAGAAATGGAATTCCGTGAGCTTCTTAGCTTCTACGAGTTCCCTGGGGATGAAATTCCCATCATTCGGGGCTCAGATTTATGCGCGTTACAAGGACACTCAATGA 483 0.4679 MGVALEDNDDYGTPPFNAEQLVSLHGKTTLTAAITRVLAEEGKAKVVALDEIDKAPKEKKRGITIAMAHVEYETAKRHYAHVDCPGHADYEKNMITGAAQMDVSIQVVFAPNGPMPRTKEHILLARQKWNSVSFLASTSSLGMKFPSFGAQIYARYKDTQ* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0907 160 PRINTS GTP-binding elongation factor signature 60 68 IPR000795 GO:0003924|GO:0005525
Vvi17g0907 160 PRINTS GTP-binding elongation factor signature 96 107 IPR000795 GO:0003924|GO:0005525
Vvi17g0907 160 PRINTS GTP-binding elongation factor signature 80 90 IPR000795 GO:0003924|GO:0005525
Vvi17g0907 160 PANTHER ELONGATION FACTOR TU-RELATED 25 126 - -
Vvi17g0907 160 FunFam Uncharacterized protein 23 135 - -
Vvi17g0907 160 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 53 68 IPR031157 -
Vvi17g0907 160 Gene3D - 23 135 IPR027417 -
Vvi17g0907 160 Pfam Elongation factor Tu GTP binding domain 25 128 IPR000795 GO:0003924|GO:0005525
Vvi17g0907 160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 127 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0907 Vvi-Chr17 10720461 10720943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0907 52 125 Eukaryotic Initiation Factors Gene Family AT1G07930 39.506 8.90e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0907 K02358 - gmx:100791600 184.882