LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g0906	ATGAACCATTACGACCTCAGATTCTCCGATCCTCACTCCTATCGCGAACGTAGAAGCGACCTAATGGTGGCACCGCCTCCCGTAGCACCTCCGCCGATGATGGGCGGTGTAGTCGGTGGGCCCAGCCCGACCTACGGACGGGGTGGGCCGGCTTCCTACGGAGGACCTTCGGTTTCTTTCCCTAACGGCGGAAGAGGAGGTGGGGATGTTTCCGGATCTGTGCCTGGCGGAGGGGGTTTCAACGCTTACCCGCCTTTTCAGCCTGGTTCCGGAAGGTTTGAGATTGGCCGGGGTGGCGGTGGCGGTGGCGGAGTAGGAAGGGGGTTTAGTGGAGGGAAAGGTAGTGGTGGAGAGTTCGGTGGAAGAATGGCTAATGGTGATCTTGGAAATAGAAGAGGCGATGGAGATCGAGGTCGTGGTGGTGGTGGTGCTAGGGGCCGAGAAGGTGGGCGAGGTACAGGTGATGGAGGGAGGCGTGCTTATGACTCCGGTCGTGGCGGAGGTAGGACAGGCGGCAGCAGGAGTTCAGATGGTGGCAGAGGTGGTGGCGGTAGTAGGACTTTTGATGGAGGCCATGGTCGCGGCGGTATTAGAAGTTCTGACGCTGGCCGTGGTGGTAGGAGTTTTACCGGAGGCAGGGGTGGTGGAAGGAGTGGTTTTGACGGAGGCCGTGGTGGAGGAAGGGGAGGTAGGCATGGGGGAGCATCGAGAGGGGACTTAGACAACATTGCTCTTCCCAAGCAAGATTTTGGAAGCTTGGTTCCCTTTGAGAAGAATTTTTATATTGAGAGCCCTTCTGTGCAAGCAATGTCGGAGCAAGAAGCAATGCTCTATCGTGCAAGGCGTGAAATCACAGTGGAAGGCTATGATGTCCCGAAGCCTATCCGACACTTTCAAGAGGCAAATTTCCCTGGGTATTGCCTTGAGGTGATTGCTAAATTGGGTTTTGTTGAGCCAACGCCTATTCAGGCTCAAGGATGGCCAATGGCCTTAAAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCAGGGAAGACCTTGGCTTATTTGCTTCCAGCTTTGGTTCATGTTAGTGCACAGCCTCCATTAGGTCCTATTGTGCTAGTGTTAGCACCTACAAGAGAATTGGCTGTTCAGATTCAAGAAGAAGCTCTAAAATTTGGATCATTTACAAAGATTAGGAGCACTTGCATTTATGGTGGTGCTCCAAAGGGACCACAGATTCGTGATCTTCAAAGAGGTGTTGAGATTGTCATTGCTACACCTGGACGATTAATAGATATGCTGGAGGCTCAACATACAAACCTGCGAAGAGTGACTTACCTTGTATTAGATGAGGCTGACCGAATGTTAGACATGGGATTTGAACCTCAGATCAGGAAAATTATTTCCCAAATCCGACCAGATAGACAGACATTATACTGGAGTGCCACATGGCCAAGGGAGGTGGAAACTCTAGCGAGGCAGTTCTTACGTAATCCATACAAGGTAATCATTGGATCCCAAGACCTGAAAGCAAATCAATCTATTCAACAAGTTGTTGAGGTTGTGACAGAGACGGAGAAATATAACAGGTTGATCAGATTGCTCAAAGAAGTGATGGATGGAAGCCGAATCCTGATATTCATGGAGACAAAGAAGGGATGTGACCAAGTTACTAGGCAGATGAGAATGGATGGATGGCCATCTCTATCTATCCATGGTGATAAAAACCAGGCTGAAAGGGACTGGGTCCTTGCAGAGTTTAAAAGTGGCAGAAGTCCTATAATGACTGCCACTGATGTAGCTGCCCGTGGTCTTGATGTCAAGGACATAAAATGTGTGATCAATTATGATTTCCCATCAAGCCTCGAAGATTATGTCCACAGGATTGGCCGAACAGGTCGTGCAGGGGCCAAGGGAACTGCCATTACCTTTTTTACACATTCAAATGCAAAGTTTGCTAGAGATCTCATCAAGATTCTGCAAGAAGCAGGGCAGGTTGTGAGTCCTGCATTGTCTGCCATGGCCCGCTCAAGTGGTTCTGCATTTGGAGGTTCCGGAGGCAACTTCCGATCAAGGGGACGGGGTGGCAGCTTTGGCAACCGAGGTTTGATTTCAGGATCTAATACCATTCCTCTTGGTGCAAGGAGGCCTTGGTAG	2145	0.5035	MNHYDLRFSDPHSYRERRSDLMVAPPPVAPPPMMGGVVGGPSPTYGRGGPASYGGPSVSFPNGGRGGGDVSGSVPGGGGFNAYPPFQPGSGRFEIGRGGGGGGGVGRGFSGGKGSGGEFGGRMANGDLGNRRGDGDRGRGGGGARGREGGRGTGDGGRRAYDSGRGGGRTGGSRSSDGGRGGGGSRTFDGGHGRGGIRSSDAGRGGRSFTGGRGGGRSGFDGGRGGGRGGRHGGASRGDLDNIALPKQDFGSLVPFEKNFYIESPSVQAMSEQEAMLYRARREITVEGYDVPKPIRHFQEANFPGYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPPLGPIVLVLAPTRELAVQIQEEALKFGSFTKIRSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSQDLKANQSIQQVVEVVTETEKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRMDGWPSLSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAITFFTHSNAKFARDLIKILQEAGQVVSPALSAMARSSGSAFGGSGGNFRSRGRGGSFGNRGLISGSNTIPLGARRPW*	715

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g0906	714	Gene3D	-	259	502	IPR027417	-
	Vvi17g0906	714	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	526	671	IPR001650	-
	Vvi17g0906	714	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	296	324	IPR014014	GO:0003724
	Vvi17g0906	714	Gene3D	-	504	675	IPR027417	-
	Vvi17g0906	714	FunFam	ATP-dependent RNA helicase RhlB	502	675	-	-
	Vvi17g0906	714	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	365	652	IPR027417	-
	Vvi17g0906	714	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	444	452	IPR000629	-
	Vvi17g0906	714	Pfam	DEAD/DEAH box helicase	320	487	IPR011545	GO:0003676\|GO:0005524
	Vvi17g0906	714	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	327	498	IPR014001	-
	Vvi17g0906	714	SMART	helicmild6	551	632	IPR001650	-
	Vvi17g0906	714	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	275	671	-	-
	Vvi17g0906	714	MobiDBLite	consensus disorder prediction	49	242	-	-
	Vvi17g0906	714	CDD	DEADc_DDX5_DDX17	308	498	-	-
	Vvi17g0906	714	SMART	ultradead3	315	514	IPR014001	-
	Vvi17g0906	714	Pfam	Helicase conserved C-terminal domain	522	632	IPR001650	-
	Vvi17g0906	714	FunFam	probable ATP-dependent RNA helicase DDX17	258	501	-	-
	Vvi17g0906	714	MobiDBLite	consensus disorder prediction	129	144	-	-
	Vvi17g0906	714	CDD	SF2_C_DEAD	511	641	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g0906	Vvi-Chr17	10708216	10713883	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi17g0906	283	652	Eukaryotic Initiation Factors Gene Family	AT3G19760	35.753	5.56e-68	227

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g0906	K12823		-	vvi:100260348	1082.78