Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0905 ATGACGACTCGGTTCAAGAAGAACAGGAAGAAGCGCGGCCACGTCAGCGCCGGCCATGGCCGTATCGGAAAACATAGAAAGCATCCCGGTGGTCGCGGTAACGCCGGAGGTATGCACCATCACCGAATCCTCTTCGACAAGTACCATCCTGGTTACTTCGGCAAGGTCGGTATGCGATACTTCCACAAGCTTCGTAATAAGTTCTACTGCCCGATCGTCAACATCGACAAGCTCTGGTCCCTTATCCCCCAAGATGTCAAGGATAAGGCCTCTCCCGAGAACGCCCCCTTGATCGACGTCACTCAGTTTGGCTATTTCAAGGTTTTGGGTAAAGGAGCTTTGCCGGAGTCGAAGCCGATTGTTGTGAAGGCCAAGCTGGTGTCGAAGATCGCCGAGAAGAAGATTAAGGAGGCCGGCGGTGCCGTTGTTCTCACTGCCTAG 441 0.5397 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKLWSLIPQDVKDKASPENAPLIDVTQFGYFKVLGKGALPESKPIVVKAKLVSKIAEKKIKEAGGAVVLTA* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0905 146 Hamap 50S ribosomal protein L15 [rplO]. 1 145 IPR030878 GO:0003735|GO:0006412|GO:0015934
Vvi17g0905 146 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 146 - -
Vvi17g0905 146 SUPERFAMILY Ribosomal proteins L15p and L18e 6 145 IPR036227 -
Vvi17g0905 146 Gene3D - 58 146 - -
Vvi17g0905 146 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 IPR021131 -
Vvi17g0905 146 ProSitePatterns Ribosomal protein L15 signature. 107 139 IPR001196 GO:0003735|GO:0005840|GO:0006412
Vvi17g0905 146 MobiDBLite consensus disorder prediction 1 35 - -
Vvi17g0905 146 FunFam 60S ribosomal protein L27a 58 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0905 Vvi-Chr17 10706598 10707038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0905 1 146 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 88.356 6.98e-95 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0905 K02900 - vvi:100250040 306.219