Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0902 ATGGGACGTCATTCCTGTTGTTTAAAGCAGAAGTTGAGGAAGGGTCTGTGGTCTCCAGAGGAGGATGAGAAACTGTACAATTACATAACCAGATTTGGTGTTGGGTGTTGGAGTTCAGTTCCCAAGCTGGCTGGTTTGCAGAGGTGCGGAAAGAGTTGCAGATTGAGATGGATTAACTATTTGAGACCCGACCTTAAGAGAGGAATGTTCTCTCAGCAAGAGGAGGATATCATAATAAGCCTGCATCAGGTTCTAGGCAACAGGTGGGCTCAGATTGCAGCACAATTGCCAGGAAGAACAGACAATGAGATTAAGAACTTTTGGAACTCATGCTTGAAGAAGAAGCTACTGAAGCAAGGCATGGATCCCAACACCCACAAGCCACTGAATGAAACCGAAGTAGGAGATGGCAAGAATTGTACAGAGAAAGCATCTCTGCAAGTATTGCAGCCAAAAGGACTTCCTGCAGTACCATCATCTGCAGCTGAATTTGAGCAGCCATTTATGGTGAACAATTCGAGTTGCTATGATGGTGGACTAACAGAAGGGTCAAGAGTGCAGTTTATGAACAAGCCAGGCTTTGATCCTATGTCCTTCTTTGAATTCCAGGCAGGCGTTGATCCAATGGGGTATAGTTCCAATTTGTTATCTCAATATCATCAAACTATTAGACCATTTGATCAAAACCAGTTGGAGGCGAATTCCAATGTGGGTTTTGCTTCATTGCCTGGTTTAACCAATTTTGATCAGGGAAACTTGACGGAGACGGATTTTTCTGATAATTCAGCTTCAAGAATGGGTTCATTTTTCTTCAATGAAGCCAAGGAAAGTTCAAGTAACAGTTCAAATATAACTAGTCACCCTGCTGGATTCCAGATTAACAATATGGGGGAAAATGTGGCTTTCTCATGGGATGCAGAGAATAAGTTGGAAGCTTTGTTTCAATATCAGATTAGCGGTATCAAATCCGAAGAATTGAAGCCAAGTTCATGGTATGGGGATCAGGTTCATAGTCAAAATTCAGAAGATTTCAGTAACTATCCATTGACGTCGCTATCAGAAGATCTAAACGGAGCAAGCTTTGATGTCTTCCAGCAGATGTGA 1104 0.4239 MGRHSCCLKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDIIISLHQVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGMDPNTHKPLNETEVGDGKNCTEKASLQVLQPKGLPAVPSSAAEFEQPFMVNNSSCYDGGLTEGSRVQFMNKPGFDPMSFFEFQAGVDPMGYSSNLLSQYHQTIRPFDQNQLEANSNVGFASLPGLTNFDQGNLTETDFSDNSASRMGSFFFNEAKESSSNSSNITSHPAGFQINNMGENVAFSWDAENKLEALFQYQISGIKSEELKPSSWYGDQVHSQNSEDFSNYPLTSLSEDLNGASFDVFQQM* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0902 367 FunFam MYB transcription factor 11 67 - -
Vvi17g0902 367 PANTHER MYB DOMAIN PROTEIN 55 1 298 - -
Vvi17g0902 367 Gene3D - 11 67 - -
Vvi17g0902 367 CDD SANT 70 109 IPR001005 -
Vvi17g0902 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vvi17g0902 367 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi17g0902 367 CDD SANT 17 61 IPR001005 -
Vvi17g0902 367 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vvi17g0902 367 Gene3D - 68 138 - -
Vvi17g0902 367 FunFam Transcription factor MYB86 69 137 - -
Vvi17g0902 367 SMART sant 66 114 IPR001005 -
Vvi17g0902 367 SMART sant 13 63 IPR001005 -
Vvi17g0902 367 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi17g0902 367 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vvi17g0902 367 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi17g0902 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0902 Vvi-Chr17 10650310 10651586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0902 1 135 MYB Transcription Factor Family AT4G01680 82.222 2.47e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi17g0902 Myb_DNA-binding 9.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0902 K09422 - vvi:100241618 749.584