Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0895 ATGGCTTCATCCAGCTCTTACAACTCTCCTTGTGCTGCCTGCAAGTTCCTGAGGAGGAAATGCATGCCTGGATGCATCTTTGCACCGTACTTCCCACCAGAGGAGCCGCAGAAATTTGCCAATGTTCACAAGATCTTTGGTGCAAGCAATGTCACAAAGCTCCTGAATGAGCTCCTCCCTCACCAAAGAGAGGATGCAGTGAATTCTCTTGCCTATGAAGCTGAGGCAAGAGTGAGGGATCCAGTGTACGGCTGTGTTGGTGCTATATCATTCCTCCAAAGACAGGTTGAGAGGCTCCAGAAGGAGCTTGATGCAGCAAATGCTGATCTGATTCGTTACGCCTGCAATGAGATGTCATCGCAATTGCCTTCACCATCACTAGTGAGGTCTACTAGTAGAAGGATTGGTAATGAAGGAGGAGGAAGCTACTTTCAAAATCCTGGTTACTCCCACCCATATTCTCTTCCATGGGATGATAACCCTTCAGGAAATATGAATGAAAGTGGAGGAGGAGGAGGGGGAGGCAGTATGACCACTACTTTGCTTTCTCAGTAA 555 0.4775 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVERLQKELDAANADLIRYACNEMSSQLPSPSLVRSTSRRIGNEGGGSYFQNPGYSHPYSLPWDDNPSGNMNESGGGGGGGSMTTTLLSQ* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0895 184 MobiDBLite consensus disorder prediction 157 184 - -
Vvi17g0895 184 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vvi17g0895 184 MobiDBLite consensus disorder prediction 124 149 - -
Vvi17g0895 184 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Vvi17g0895 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 131 - -
Vvi17g0895 184 MobiDBLite consensus disorder prediction 124 184 - -
Vvi17g0895 184 Coils Coil 89 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0895 Vvi-Chr17 10578569 10579686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0895 1 123 AS2 family AT5G63090 87.903 1.03e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi17g0895 LOB 3.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0895 - - vvi:100267218 351.288