Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0892 ATGGAGGATCAACATGAAAGGGTTCCAGTGGATGGAAGAGTTTTAGTGGAGGAAAAGGTTCTAGTGGAGCAACTAGTTCCAGTCAAAAGGGTTCATGTGGAGGAAAGATTTCATTTAGAAGAAAGGGTTCCGGTGGAAGGAAGGATTCTAGTGGAAGAAAATTTCGATCCAAGTGTTATGGGGAGGACCAATGAAAATGGGTATGAGAGCATGTTTGGAAGTGGGAACTTAGATGGTGGATTGGAGGATAAGCAAGAAACCTTGGTACTTGAGAGGCCGGCCAAGAAACTGAAGTACCATCGACATACTCAAGAGCAAATTAATGAGCTTGAAACTTGCTTCAAGAAATGGCCTCACCCTAACGATAAACAAAGGTTGGACCTCAGTAGGAAGCTCAGCTTGGAGCCAAGACAAGTGAACTTCTGGTTTCAGAATCGGTGA 441 0.4399 MEDQHERVPVDGRVLVEEKVLVEQLVPVKRVHVEERFHLEERVPVEGRILVEENFDPSVMGRTNENGYESMFGSGNLDGGLEDKQETLVLERPAKKLKYHRHTQEQINELETCFKKWPHPNDKQRLDLSRKLSLEPRQVNFWFQNR* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0892 146 ProSiteProfiles 'Homeobox' domain profile. 93 146 IPR001356 GO:0003677
Vvi17g0892 146 Pfam Homeodomain 98 146 IPR001356 GO:0003677
Vvi17g0892 146 SUPERFAMILY Homeodomain-like 85 146 IPR009057 -
Vvi17g0892 146 CDD homeodomain 98 146 IPR001356 GO:0003677
Vvi17g0892 146 Gene3D - 29 146 - -
Vvi17g0892 146 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 95 146 IPR042160 -
Vvi17g0892 146 SMART HOX_1 95 146 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0892 Vvi-Chr17 10557102 10557542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0892 53 146 Homeobox Transcription Factor Family AT4G00730 51.064 5.26e-24 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vvi17g0892 Homeodomain 8.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0892 K09338 - vvi:104882387 292.352