Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g0884 | ATGCCTGTTAATCCATGGACCCTCTTCTCCTTCCTAATCTTCTCTTTTTCATTTTTAATTCTCTTCCCCCTCATGGCTTCCGCCATCAACCAACAAGGCCAAGCTCTACTTTGGTGGAAGGGGAGCTTGAAGGAAGCGCCAGAGGCCTTAAGCAACTGGGACCAGAGCAATGAGACTCCATGTGGGTGGTTTGGGATCTCTTGCAACTCAGACAATCTAGTGGTGGAACTCAATTTGAGGTATGTCGATTTGTTTGGGCCGCTTCCCTCTAATTTCAGTTCATTGACGTCCTTGAACAAGCTAGTCTTAACTGGAACCAACCTCACTGGTTCCATCCCAAAAGAGATCGGTGTTCTTCAAGATTTGAATTATCTAGACTTGAGCGACAATGCCTTAACTGGTGAAATCCCAAGTGAGGTTTGCAGCTTGCTCAAGCTCGAACAGCTCTACCTCAATTCAAACTGGCTTGAGGGATCTATCCCAGTCCAACTCGGGAACCTCACTAGCTTGACATGGCTAATTCTATACGACAACCAACTGAGCGGTGCAATTCCAAGTAGCATAGGGAACTTGAAGAAGCTTGAAGTGATTCGAGCAGGCGGCAACAAGAACTTGGAAGGCCCTCTGCCTCAAGAAATCGGCAACTGCACCAATTTGGCCATGATAGGCCTTGCTGAAACAAGCATGTCAGGGTTCCTCCCTCCAAGTCTTGGTCGCCTCAAGAAGCTTCAGACACTTGCAATCTACACCGCCCTCCTGTCAGGCCCAATCCCCCCTGAGCTGGGTGACTGCACCGAGCTGCAAAACATCTACCTATACGAGAACGCGCTCACTGGATCCATCCCAGCCCGCCTAGGAAGCCTCCGGAACCTCCAGAACCTATTGCTATGGCAAAACAACCTGGTGGGCACCATTCCACCGGAGTTGGGAAACTGCAAGCAATTAGTAGTGATTGATATATCCATGAATTCCATATCCGGTAGAGTGCCTCAGACGTTTGGGAATCTGAGCTTTTTGCAGGAACTTCAACTGAGCGTGAACCAAATCTCAGGTCAGATTCCAGCGCAAATTGGGAACTGTCTCGGCCTCACCCATATCGAGCTCGACAACAACAAGATCACTGGTACAATACCTTCCTCTATCGGTGGCCTAGTGAATCTAACACTACTCTACTTGTGGCAAAATATGCTGGAAGGGAACATACCTGAATCGATTTCGAATTGCCGTAGTTTGGAAGCTGTTGATTTTTCAGAGAACAGCTTGACTGGTCCGATTCCGAAGGGGATTTTCCAGCTCAAGAAGCTTAACAAGCTATTGCTTTTATCCAACAATCTGGCCGGTGAGATACCTCCGGAGATTGGTGAGTGTTCGTCGTTGATACGGCTCCGAGCGAGCGATAACAAGCTGGCTGGATCGATCCCGCCACAGATTGGGAATTTAAAGAATTTGAATTTCTTGGATCTGGCATTGAATCGCCTCACTGGTGTCATACCGCAGGAGATCTCTGGTTGCCAGAATCTGACGTTCCTGGACTTGCATTCCAACTCGATTGCCGGAAACCTACCGGAGAATTTGAACCAACTGGTTTCCCTCCAGTTCGTTGATGTATCTGATAATCTGATAGAAGGGACTCTGAGTCCGAGTCTTGGATCTCTGAGTTCGCTCACCAAGCTCATTCTCCGTAAGAATCGGTTGTCCGGTCTGATTCCAAGTGAACTCAATTCGTGCGCGAAGCTGGTGTTGCTGGACCTGAGTAGCAACGATCTCACAGGTAAAATTCCATCCAGTGTGGGCGAGATTCCAGCTCTGGAGATCGCTTTGAATCTGAGCTGGAACAAACTTTCCGGCAAAATTCCGTCGGAGTTCACGGACTTGGATAAGCTCGGAATATTGGATCTCTCACACAATCAGCTCTCCGGCGACCTCCAACCCCTCTTCGACCTCCAAAACCTCGTGGTCCTCAACATCTCCTACAACAACTTCTCGGGGCGCGTGCCGGACACCCCTTTCTTCTCCAAGCTCCCACTGAGCGTCCTCGCCGGCAACCCCGCCCTCTGCCTCTCCGGCGACCAGTGCGCCGCCGACAAACGCGGTGGCGCTGCCCGCCACGCCGCGGCGGCCAGGGTGGCCATGGTGGTGCTACTATGCGCCGCCTGCGCGCTGCTCCTCGCGGCGCTCTACATCATTCTCGGGAACAAGATGAATCCACGTGGCCCCGGAGGGCCCCACCAGTGCGATGGCGACAGCGATGTGGAGATGGCCCCCCCATGGGAGTTGACCCTGTACCAAAAACTGGACCTCTCTATCGCTGACGTGGTACGCTGCCTGACAGTTGCCAACGTCGTCGGCCGTGGCCGCTCCGGCGTCGTGTACAGAGCCAACACCCCCTCCGGCCTCACCATCGCCGTGAAAAGATTTCGCTCCAGCGAAAAATTCTCCGCAGCAGCATTCTCATCCGAAATCGCCACGCTGGCACGCATCCGCCACCGAAATATAGTCCGACTGTTGGGGTGGGCGGCCAACCGAAAGACGAAACTCCTCTTCTACGATTACTTACCAAGTGGTACATTAGGCACATTACTCCATGAATGCAACTCAGCCATAGTTGAGTGGGAGAGTCGGTTCAATATAGCCTTGGGCGTGGCGGAGGGCTTAGCCTATCTGCACCATGATTGTGTGCCACCCATCATCCACCGAGACGTCAAGGCTCACAACATTTTGTTAGGGGACCGATACGAGGCCTGCTTGGCGGACTTTGGGCTAGCCAGGTTGGTGGAGGACGACGATGGCAATGGGTCCTTCTCCGCCAACCCTCAATTCGCCGGATCCTACGGCTACATTGCACCCGAGTACGCTTGCATGTTGAAGATAACCGAAAAGAGCGATGTGTACAGCTTCGGGGTGGTTTTGCTGGAAATCATAACCGGGAAGAAGCCGGTGGACCCTTCATTCCCTGATGGGCAACATGTAATTCAGTGGGTCCGAGAGCAGCTAAAGAGCAAGAGGGACCCGGTTCAGATACTGGACCCGAAGCTCCAGGGCCACCCAGATACACAAATACAAGAAATGCTCCAAGCACTGGGGATATCCCTCTTATGCACAAGCAACCGTGCGGAAGATCGTCCTACAATGAAAGATGTTGCGGTTTTGTTAAGGGAAATACGCCACGAGCCCAGCACAGGAACTGAGCCTCACAAGCCTAATAGCAATGGATCCAAAAAGCCTGAAGCTCCTGCCTACTCCTCCCAACTCTTGCTCCTCCAAGGCTCTTCCCAGTACTCACTGGCATATTCATCTTCCTCAGCTGGTTATAATGTCAATAATGATGCTAGTGTGTGA | 3339 | 0.5196 | MPVNPWTLFSFLIFSFSFLILFPLMASAINQQGQALLWWKGSLKEAPEALSNWDQSNETPCGWFGISCNSDNLVVELNLRYVDLFGPLPSNFSSLTSLNKLVLTGTNLTGSIPKEIGVLQDLNYLDLSDNALTGEIPSEVCSLLKLEQLYLNSNWLEGSIPVQLGNLTSLTWLILYDNQLSGAIPSSIGNLKKLEVIRAGGNKNLEGPLPQEIGNCTNLAMIGLAETSMSGFLPPSLGRLKKLQTLAIYTALLSGPIPPELGDCTELQNIYLYENALTGSIPARLGSLRNLQNLLLWQNNLVGTIPPELGNCKQLVVIDISMNSISGRVPQTFGNLSFLQELQLSVNQISGQIPAQIGNCLGLTHIELDNNKITGTIPSSIGGLVNLTLLYLWQNMLEGNIPESISNCRSLEAVDFSENSLTGPIPKGIFQLKKLNKLLLLSNNLAGEIPPEIGECSSLIRLRASDNKLAGSIPPQIGNLKNLNFLDLALNRLTGVIPQEISGCQNLTFLDLHSNSIAGNLPENLNQLVSLQFVDVSDNLIEGTLSPSLGSLSSLTKLILRKNRLSGLIPSELNSCAKLVLLDLSSNDLTGKIPSSVGEIPALEIALNLSWNKLSGKIPSEFTDLDKLGILDLSHNQLSGDLQPLFDLQNLVVLNISYNNFSGRVPDTPFFSKLPLSVLAGNPALCLSGDQCAADKRGGAARHAAAARVAMVVLLCAACALLLAALYIILGNKMNPRGPGGPHQCDGDSDVEMAPPWELTLYQKLDLSIADVVRCLTVANVVGRGRSGVVYRANTPSGLTIAVKRFRSSEKFSAAAFSSEIATLARIRHRNIVRLLGWAANRKTKLLFYDYLPSGTLGTLLHECNSAIVEWESRFNIALGVAEGLAYLHHDCVPPIIHRDVKAHNILLGDRYEACLADFGLARLVEDDDGNGSFSANPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKKPVDPSFPDGQHVIQWVREQLKSKRDPVQILDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAVLLREIRHEPSTGTEPHKPNSNGSKKPEAPAYSSQLLLLQGSSQYSLAYSSSSAGYNVNNDASV* | 1113 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g0884 | 1112 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 607 | 691 | - | - | |
Vvi17g0884 | 1112 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 522 | 606 | - | - | |
Vvi17g0884 | 1112 | FunFam | LRR receptor-like serine/threonine-protein kinase | 765 | 851 | - | - | |
Vvi17g0884 | 1112 | ProSitePatterns | Protein kinases ATP-binding region signature. | 782 | 804 | IPR017441 | GO:0005524 | |
Vvi17g0884 | 1112 | Gene3D | Ribonuclease Inhibitor | 143 | 217 | IPR032675 | - | |
Vvi17g0884 | 1112 | Gene3D | Ribonuclease Inhibitor | 31 | 142 | IPR032675 | - | |
Vvi17g0884 | 1112 | PRINTS | Leucine-rich repeat signature | 122 | 135 | - | - | |
Vvi17g0884 | 1112 | PRINTS | Leucine-rich repeat signature | 625 | 638 | - | - | |
Vvi17g0884 | 1112 | Gene3D | Transferase(Phosphotransferase) domain 1 | 852 | 1072 | - | - | |
Vvi17g0884 | 1112 | Pfam | Leucine rich repeat | 289 | 349 | IPR001611 | GO:0005515 | |
Vvi17g0884 | 1112 | MobiDBLite | consensus disorder prediction | 1055 | 1081 | - | - | |
Vvi17g0884 | 1112 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 427 | 521 | - | - | |
Vvi17g0884 | 1112 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 896 | 908 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi17g0884 | 1112 | FunFam | LRR receptor-like serine/threonine-protein kinase RCH1 | 203 | 426 | - | - | |
Vvi17g0884 | 1112 | FunFam | LRR receptor-like serine/threonine-protein kinase RCH1 | 29 | 202 | - | - | |
Vvi17g0884 | 1112 | Gene3D | Ribonuclease Inhibitor | 220 | 328 | IPR032675 | - | |
Vvi17g0884 | 1112 | Gene3D | Ribonuclease Inhibitor | 329 | 431 | IPR032675 | - | |
Vvi17g0884 | 1112 | ProSiteProfiles | Leucine-rich repeat profile. | 627 | 649 | IPR001611 | GO:0005515 | |
Vvi17g0884 | 1112 | Gene3D | Ribonuclease Inhibitor | 432 | 693 | IPR032675 | - | |
Vvi17g0884 | 1112 | Gene3D | Phosphorylase Kinase; domain 1 | 763 | 851 | - | - | |
Vvi17g0884 | 1112 | SUPERFAMILY | Protein kinase-like (PK-like) | 765 | 1051 | IPR011009 | - | |
Vvi17g0884 | 1112 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 465 | 1051 | - | - | |
Vvi17g0884 | 1112 | Pfam | Leucine rich repeat N-terminal domain | 30 | 69 | IPR013210 | - | |
Vvi17g0884 | 1112 | SUPERFAMILY | L domain-like | 29 | 301 | - | - | |
Vvi17g0884 | 1112 | SUPERFAMILY | RNI-like | 269 | 650 | - | - | |
Vvi17g0884 | 1112 | SMART | LRR_typ_2 | 119 | 143 | IPR003591 | - | |
Vvi17g0884 | 1112 | SMART | LRR_typ_2 | 167 | 191 | IPR003591 | - | |
Vvi17g0884 | 1112 | SMART | LRR_typ_2 | 336 | 360 | IPR003591 | - | |
Vvi17g0884 | 1112 | SMART | LRR_typ_2 | 288 | 312 | IPR003591 | - | |
Vvi17g0884 | 1112 | SMART | LRR_typ_2 | 625 | 648 | IPR003591 | - | |
Vvi17g0884 | 1112 | SMART | LRR_typ_2 | 384 | 408 | IPR003591 | - | |
Vvi17g0884 | 1112 | SMART | LRR_typ_2 | 480 | 504 | IPR003591 | - | |
Vvi17g0884 | 1112 | SMART | LRR_typ_2 | 432 | 456 | IPR003591 | - | |
Vvi17g0884 | 1112 | SMART | LRR_typ_2 | 552 | 575 | IPR003591 | - | |
Vvi17g0884 | 1112 | SMART | serkin_6 | 776 | 1051 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi17g0884 | 1112 | ProSiteProfiles | Protein kinase domain profile. | 776 | 1059 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi17g0884 | 1112 | FunFam | LRR receptor-like serine/threonine-protein kinase RCH1 | 852 | 1069 | - | - | |
Vvi17g0884 | 1112 | Pfam | Protein tyrosine and serine/threonine kinase | 777 | 1048 | IPR001245 | GO:0004672|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi17g0884 | Vvi-Chr17 | 10370241 | 10373888 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi17g0884 | 28 | 1102 | Receptor kinase-like Gene Family | AT5G56040 | 54.613 | 0.0 | 1136 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Vvi17g0884 | Pkinase | 1.9e-40 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g0884 | - | - | vvi:100262226 | 2030.76 |