Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0884 ATGCCTGTTAATCCATGGACCCTCTTCTCCTTCCTAATCTTCTCTTTTTCATTTTTAATTCTCTTCCCCCTCATGGCTTCCGCCATCAACCAACAAGGCCAAGCTCTACTTTGGTGGAAGGGGAGCTTGAAGGAAGCGCCAGAGGCCTTAAGCAACTGGGACCAGAGCAATGAGACTCCATGTGGGTGGTTTGGGATCTCTTGCAACTCAGACAATCTAGTGGTGGAACTCAATTTGAGGTATGTCGATTTGTTTGGGCCGCTTCCCTCTAATTTCAGTTCATTGACGTCCTTGAACAAGCTAGTCTTAACTGGAACCAACCTCACTGGTTCCATCCCAAAAGAGATCGGTGTTCTTCAAGATTTGAATTATCTAGACTTGAGCGACAATGCCTTAACTGGTGAAATCCCAAGTGAGGTTTGCAGCTTGCTCAAGCTCGAACAGCTCTACCTCAATTCAAACTGGCTTGAGGGATCTATCCCAGTCCAACTCGGGAACCTCACTAGCTTGACATGGCTAATTCTATACGACAACCAACTGAGCGGTGCAATTCCAAGTAGCATAGGGAACTTGAAGAAGCTTGAAGTGATTCGAGCAGGCGGCAACAAGAACTTGGAAGGCCCTCTGCCTCAAGAAATCGGCAACTGCACCAATTTGGCCATGATAGGCCTTGCTGAAACAAGCATGTCAGGGTTCCTCCCTCCAAGTCTTGGTCGCCTCAAGAAGCTTCAGACACTTGCAATCTACACCGCCCTCCTGTCAGGCCCAATCCCCCCTGAGCTGGGTGACTGCACCGAGCTGCAAAACATCTACCTATACGAGAACGCGCTCACTGGATCCATCCCAGCCCGCCTAGGAAGCCTCCGGAACCTCCAGAACCTATTGCTATGGCAAAACAACCTGGTGGGCACCATTCCACCGGAGTTGGGAAACTGCAAGCAATTAGTAGTGATTGATATATCCATGAATTCCATATCCGGTAGAGTGCCTCAGACGTTTGGGAATCTGAGCTTTTTGCAGGAACTTCAACTGAGCGTGAACCAAATCTCAGGTCAGATTCCAGCGCAAATTGGGAACTGTCTCGGCCTCACCCATATCGAGCTCGACAACAACAAGATCACTGGTACAATACCTTCCTCTATCGGTGGCCTAGTGAATCTAACACTACTCTACTTGTGGCAAAATATGCTGGAAGGGAACATACCTGAATCGATTTCGAATTGCCGTAGTTTGGAAGCTGTTGATTTTTCAGAGAACAGCTTGACTGGTCCGATTCCGAAGGGGATTTTCCAGCTCAAGAAGCTTAACAAGCTATTGCTTTTATCCAACAATCTGGCCGGTGAGATACCTCCGGAGATTGGTGAGTGTTCGTCGTTGATACGGCTCCGAGCGAGCGATAACAAGCTGGCTGGATCGATCCCGCCACAGATTGGGAATTTAAAGAATTTGAATTTCTTGGATCTGGCATTGAATCGCCTCACTGGTGTCATACCGCAGGAGATCTCTGGTTGCCAGAATCTGACGTTCCTGGACTTGCATTCCAACTCGATTGCCGGAAACCTACCGGAGAATTTGAACCAACTGGTTTCCCTCCAGTTCGTTGATGTATCTGATAATCTGATAGAAGGGACTCTGAGTCCGAGTCTTGGATCTCTGAGTTCGCTCACCAAGCTCATTCTCCGTAAGAATCGGTTGTCCGGTCTGATTCCAAGTGAACTCAATTCGTGCGCGAAGCTGGTGTTGCTGGACCTGAGTAGCAACGATCTCACAGGTAAAATTCCATCCAGTGTGGGCGAGATTCCAGCTCTGGAGATCGCTTTGAATCTGAGCTGGAACAAACTTTCCGGCAAAATTCCGTCGGAGTTCACGGACTTGGATAAGCTCGGAATATTGGATCTCTCACACAATCAGCTCTCCGGCGACCTCCAACCCCTCTTCGACCTCCAAAACCTCGTGGTCCTCAACATCTCCTACAACAACTTCTCGGGGCGCGTGCCGGACACCCCTTTCTTCTCCAAGCTCCCACTGAGCGTCCTCGCCGGCAACCCCGCCCTCTGCCTCTCCGGCGACCAGTGCGCCGCCGACAAACGCGGTGGCGCTGCCCGCCACGCCGCGGCGGCCAGGGTGGCCATGGTGGTGCTACTATGCGCCGCCTGCGCGCTGCTCCTCGCGGCGCTCTACATCATTCTCGGGAACAAGATGAATCCACGTGGCCCCGGAGGGCCCCACCAGTGCGATGGCGACAGCGATGTGGAGATGGCCCCCCCATGGGAGTTGACCCTGTACCAAAAACTGGACCTCTCTATCGCTGACGTGGTACGCTGCCTGACAGTTGCCAACGTCGTCGGCCGTGGCCGCTCCGGCGTCGTGTACAGAGCCAACACCCCCTCCGGCCTCACCATCGCCGTGAAAAGATTTCGCTCCAGCGAAAAATTCTCCGCAGCAGCATTCTCATCCGAAATCGCCACGCTGGCACGCATCCGCCACCGAAATATAGTCCGACTGTTGGGGTGGGCGGCCAACCGAAAGACGAAACTCCTCTTCTACGATTACTTACCAAGTGGTACATTAGGCACATTACTCCATGAATGCAACTCAGCCATAGTTGAGTGGGAGAGTCGGTTCAATATAGCCTTGGGCGTGGCGGAGGGCTTAGCCTATCTGCACCATGATTGTGTGCCACCCATCATCCACCGAGACGTCAAGGCTCACAACATTTTGTTAGGGGACCGATACGAGGCCTGCTTGGCGGACTTTGGGCTAGCCAGGTTGGTGGAGGACGACGATGGCAATGGGTCCTTCTCCGCCAACCCTCAATTCGCCGGATCCTACGGCTACATTGCACCCGAGTACGCTTGCATGTTGAAGATAACCGAAAAGAGCGATGTGTACAGCTTCGGGGTGGTTTTGCTGGAAATCATAACCGGGAAGAAGCCGGTGGACCCTTCATTCCCTGATGGGCAACATGTAATTCAGTGGGTCCGAGAGCAGCTAAAGAGCAAGAGGGACCCGGTTCAGATACTGGACCCGAAGCTCCAGGGCCACCCAGATACACAAATACAAGAAATGCTCCAAGCACTGGGGATATCCCTCTTATGCACAAGCAACCGTGCGGAAGATCGTCCTACAATGAAAGATGTTGCGGTTTTGTTAAGGGAAATACGCCACGAGCCCAGCACAGGAACTGAGCCTCACAAGCCTAATAGCAATGGATCCAAAAAGCCTGAAGCTCCTGCCTACTCCTCCCAACTCTTGCTCCTCCAAGGCTCTTCCCAGTACTCACTGGCATATTCATCTTCCTCAGCTGGTTATAATGTCAATAATGATGCTAGTGTGTGA 3339 0.5196 MPVNPWTLFSFLIFSFSFLILFPLMASAINQQGQALLWWKGSLKEAPEALSNWDQSNETPCGWFGISCNSDNLVVELNLRYVDLFGPLPSNFSSLTSLNKLVLTGTNLTGSIPKEIGVLQDLNYLDLSDNALTGEIPSEVCSLLKLEQLYLNSNWLEGSIPVQLGNLTSLTWLILYDNQLSGAIPSSIGNLKKLEVIRAGGNKNLEGPLPQEIGNCTNLAMIGLAETSMSGFLPPSLGRLKKLQTLAIYTALLSGPIPPELGDCTELQNIYLYENALTGSIPARLGSLRNLQNLLLWQNNLVGTIPPELGNCKQLVVIDISMNSISGRVPQTFGNLSFLQELQLSVNQISGQIPAQIGNCLGLTHIELDNNKITGTIPSSIGGLVNLTLLYLWQNMLEGNIPESISNCRSLEAVDFSENSLTGPIPKGIFQLKKLNKLLLLSNNLAGEIPPEIGECSSLIRLRASDNKLAGSIPPQIGNLKNLNFLDLALNRLTGVIPQEISGCQNLTFLDLHSNSIAGNLPENLNQLVSLQFVDVSDNLIEGTLSPSLGSLSSLTKLILRKNRLSGLIPSELNSCAKLVLLDLSSNDLTGKIPSSVGEIPALEIALNLSWNKLSGKIPSEFTDLDKLGILDLSHNQLSGDLQPLFDLQNLVVLNISYNNFSGRVPDTPFFSKLPLSVLAGNPALCLSGDQCAADKRGGAARHAAAARVAMVVLLCAACALLLAALYIILGNKMNPRGPGGPHQCDGDSDVEMAPPWELTLYQKLDLSIADVVRCLTVANVVGRGRSGVVYRANTPSGLTIAVKRFRSSEKFSAAAFSSEIATLARIRHRNIVRLLGWAANRKTKLLFYDYLPSGTLGTLLHECNSAIVEWESRFNIALGVAEGLAYLHHDCVPPIIHRDVKAHNILLGDRYEACLADFGLARLVEDDDGNGSFSANPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKKPVDPSFPDGQHVIQWVREQLKSKRDPVQILDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAVLLREIRHEPSTGTEPHKPNSNGSKKPEAPAYSSQLLLLQGSSQYSLAYSSSSAGYNVNNDASV* 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0884 1112 FunFam Putative LRR receptor-like serine/threonine-protein kinase 607 691 - -
Vvi17g0884 1112 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 522 606 - -
Vvi17g0884 1112 FunFam LRR receptor-like serine/threonine-protein kinase 765 851 - -
Vvi17g0884 1112 ProSitePatterns Protein kinases ATP-binding region signature. 782 804 IPR017441 GO:0005524
Vvi17g0884 1112 Gene3D Ribonuclease Inhibitor 143 217 IPR032675 -
Vvi17g0884 1112 Gene3D Ribonuclease Inhibitor 31 142 IPR032675 -
Vvi17g0884 1112 PRINTS Leucine-rich repeat signature 122 135 - -
Vvi17g0884 1112 PRINTS Leucine-rich repeat signature 625 638 - -
Vvi17g0884 1112 Gene3D Transferase(Phosphotransferase) domain 1 852 1072 - -
Vvi17g0884 1112 Pfam Leucine rich repeat 289 349 IPR001611 GO:0005515
Vvi17g0884 1112 MobiDBLite consensus disorder prediction 1055 1081 - -
Vvi17g0884 1112 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 427 521 - -
Vvi17g0884 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Vvi17g0884 1112 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 203 426 - -
Vvi17g0884 1112 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 29 202 - -
Vvi17g0884 1112 Gene3D Ribonuclease Inhibitor 220 328 IPR032675 -
Vvi17g0884 1112 Gene3D Ribonuclease Inhibitor 329 431 IPR032675 -
Vvi17g0884 1112 ProSiteProfiles Leucine-rich repeat profile. 627 649 IPR001611 GO:0005515
Vvi17g0884 1112 Gene3D Ribonuclease Inhibitor 432 693 IPR032675 -
Vvi17g0884 1112 Gene3D Phosphorylase Kinase; domain 1 763 851 - -
Vvi17g0884 1112 SUPERFAMILY Protein kinase-like (PK-like) 765 1051 IPR011009 -
Vvi17g0884 1112 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 465 1051 - -
Vvi17g0884 1112 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Vvi17g0884 1112 SUPERFAMILY L domain-like 29 301 - -
Vvi17g0884 1112 SUPERFAMILY RNI-like 269 650 - -
Vvi17g0884 1112 SMART LRR_typ_2 119 143 IPR003591 -
Vvi17g0884 1112 SMART LRR_typ_2 167 191 IPR003591 -
Vvi17g0884 1112 SMART LRR_typ_2 336 360 IPR003591 -
Vvi17g0884 1112 SMART LRR_typ_2 288 312 IPR003591 -
Vvi17g0884 1112 SMART LRR_typ_2 625 648 IPR003591 -
Vvi17g0884 1112 SMART LRR_typ_2 384 408 IPR003591 -
Vvi17g0884 1112 SMART LRR_typ_2 480 504 IPR003591 -
Vvi17g0884 1112 SMART LRR_typ_2 432 456 IPR003591 -
Vvi17g0884 1112 SMART LRR_typ_2 552 575 IPR003591 -
Vvi17g0884 1112 SMART serkin_6 776 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0884 1112 ProSiteProfiles Protein kinase domain profile. 776 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0884 1112 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 852 1069 - -
Vvi17g0884 1112 Pfam Protein tyrosine and serine/threonine kinase 777 1048 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0884 Vvi-Chr17 10370241 10373888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0884 28 1102 Receptor kinase-like Gene Family AT5G56040 54.613 0.0 1136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi17g0884 Pkinase 1.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0884 - - vvi:100262226 2030.76