Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0883 ATGGCCTGGAAAAGTGTTAAGAAGGATTTTTCTACTGCAATTTTGGAACGTAAGAAGTCACCCAATCGTCTCGTTGTCGATGAAGCGGTGAATGATGACAATTCTGTGGTTTCCATGAACCCTGCAACAATGGAAAAGCTTCAGTTCTTTCGAGGAGACACTGTTCTAATCAAGGGAAAGAAACGAAAAGACACAGTGTGCATTGTTCTTGTTGATGAACAATGCGAAGAACCAAAGATCAGAATGAACAAAGTTGTACGAGCCAATCTTAGGGTACGCCTTGGAGATGTTGTTTCTGTCCATCAGTGTCCTGATGTGAAGTACGGAAAGCGAGTTCACATCCTCCCAATTGATGATACAATTGAGGGTGTGACTGGCAACCTGTTTGATGCATATTTAAAACCATATTTCTTGGAATCCTATCGGCCTGTTAGGAAGGGTGACCTTTTCCTGGTCAGAGGAGGGATGCGAAGTGTTGAATTCAAAGTAATTGAAACAGATCCTGGTGAATATTGTGTTGTTGCACCAGATACTGAGATCTTCTGTGAGGGAGAACCCATCAAACGTGAAGATGAGGAGAGATTGAATGAAGTTGGCTATGATGATGTTGGTGGTGTAAGGAAGCAGATGGCCCAGATCCGTGAGCTGGTAGAACTTCCCCTTAGGCACCCACAGCTTTTCAAATCTATTGGGGTGAAGCCACCAAAAGGCATTTTGCTCTATGGGCCACCTGGGTCTGGAAAAACCCTAATTGCAAGAGCTGTAGCTAATGAGACTGGTGCATTTTTCTTCCTGATAAATGGACCTGAAATAATGTCAAAGTTGGCTGGTGAAAGTGAAAGTAACTTGAGGAAGGCATTTGAGGAAGCAGAAAAGAATGCCCCATCCATCATTTTCATTGATGAGCTAGATTCTATTGCTCCAAAGAGGGAAAAGACACATGGTGAAGTGGAGAGGCGTATTGTATCCCAGCTGTTGACTCTAATGGATGGCCTTAAGACCAGGGCTCACGTGATTGTCATTGGTGCTACCAACAGGCCAAATAGCATTGACCCTGCATTAAGGAGATTTGGGAGATTTGATAGAGAGATTGACATTGGTGTACCAGATGAGGTTGGCAGGCTGGAAGTCCTTCGAATCCACACAAAGAATATGAAACTTTCTGATGATGTTGATCTTGAAAGAGTTGCAAAAGATACACATGGTTATGTTGGTGCAGATCTTGCTGCTCTTTGCACAGAAGCTGCTCTTCAGTGTATCAGGGAGAAAATGGATGTGATTGACTTGGAGGATGAGACAATTGATGCTGAGGTGTTGAATTCCATGGCTGTGACTAATGAACACTTCCAAACTGCACTGGGGTCTTCCAATCCATCGGCCTTGCGTGAAACAGTTGTGGAGGTTCCAAATGTGTCATGGGAGGACATTGGTGGGTTGGACAATGTTAAAAGAGAGCTTCAGGAGACTGTCCAATATCCAGTGGAGCATCCTGAGAAGTTCGAGAAATTTGGCATGTCACCTTCTAAAGGTGTGCTCTTCTATGGACCTCCTGGCTGTGGTAAAACCCTACTTGCGAAGGCAATTGCAAATGAATGCCAGGCCAACTTCATAAGTGTTAAAGGACCTGAGTTGCTGACCATGTGGTTTGGAGAAAGTGAGGCAAATGTGCGGGAGATATTTGACAAGGCACGGCAGTCAGCACCGTGTGTACTCTTCTTTGATGAACTTGATTCAATTGCAACTCAGCGTGGCAGTTCTGTAGGGGATGCTGGTGGTGCTGCTGACAGAGTCTTGAATCAACTTCTGACAGAAATGGATGGAATGACTGCAAAGAAGACTGTTTTCATCATAGGAGCAACAAACAGGCCTGACATTATTGACCCAGCATTGCTCAGGCCTGGACGTTTGGACCAGTTGATTTACATTCCACTACCAGATGAGGCTTCCCGTCTGCAAATATTCAAAGCATGCTTAAGGAAGTCACCAGTCTCTAGGGATGTTGACCTAGTAGCTCTTGCACGGTATACTCATGGTTTTAGTGGTGCAGATATCACTGAAATTTGTCAACGGTCCTGCAAATATGCCATTAGAGAAAATATTGAGAAGGATATTGAGAGGGAGAGAAAGAAGACAGAGAACCCTGAGGCGATGGAAGAAGATGATGTTGATGATGTCCCTGAGATTAAAGCAGCACACTTTGAGGAGTCTATGAAATTTGCACGCCGAAGTGTCAGTGATGCAGATATCAGGAAGTACCAGCTCTTTGCTCAGACTCTACAGCAATCACGGGGATTTGGATCTGAGTTTCGGTTTCCAGATCAGCCCAACAATGCCACAGCAGCATCAACAGCTGCAGACCCATTCTCCTCAGCAGCTGCTGCTGGAGATGATGATGACCTGTACAGCTGA 2409 0.4483 MAWKSVKKDFSTAILERKKSPNRLVVDEAVNDDNSVVSMNPATMEKLQFFRGDTVLIKGKKRKDTVCIVLVDEQCEEPKIRMNKVVRANLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERVAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPVSRDVDLVALARYTHGFSGADITEICQRSCKYAIRENIEKDIERERKKTENPEAMEEDDVDDVPEIKAAHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFPDQPNNATAASTAADPFSSAAAAGDDDDLYS* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0883 802 FunFam Cell division control 48 369 460 - -
Vvi17g0883 802 SMART AAA_5 234 370 IPR003593 GO:0016887
Vvi17g0883 802 SMART AAA_5 507 646 IPR003593 GO:0016887
Vvi17g0883 802 Pfam Cell division protein 48 (CDC48), domain 2 125 188 IPR004201 -
Vvi17g0883 802 ProSitePatterns AAA-protein family signature. 614 632 IPR003960 GO:0005524|GO:0016887
Vvi17g0883 802 SUPERFAMILY Cdc48 domain 2-like 105 197 IPR029067 -
Vvi17g0883 802 FunFam Transitional endoplasmic reticulum ATPase 461 644 - -
Vvi17g0883 802 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 459 IPR027417 -
Vvi17g0883 802 MobiDBLite consensus disorder prediction 766 802 - -
Vvi17g0883 802 Gene3D - 106 202 - -
Vvi17g0883 802 Gene3D - 203 367 IPR027417 -
Vvi17g0883 802 ProSitePatterns AAA-protein family signature. 338 356 IPR003960 GO:0005524|GO:0016887
Vvi17g0883 802 Gene3D - 648 756 - -
Vvi17g0883 802 Gene3D - 2 105 - -
Vvi17g0883 802 CDD RecA-like_CDC48_r1-like 202 367 - -
Vvi17g0883 802 FunFam Transitional endoplasmic reticulum ATPase 199 367 - -
Vvi17g0883 802 MobiDBLite consensus disorder prediction 766 786 - -
Vvi17g0883 802 FunFam Transitional endoplasmic reticulum ATPase 2 105 - -
Vvi17g0883 802 Pfam Cell division protein 48 (CDC48), N-terminal domain 23 104 IPR003338 -
Vvi17g0883 802 SUPERFAMILY ADC-like 19 103 IPR009010 -
Vvi17g0883 802 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 757 IPR027417 -
Vvi17g0883 802 SMART CDC48_N_2 23 106 IPR003338 -
Vvi17g0883 802 Gene3D - 369 460 - -
Vvi17g0883 802 Gene3D - 461 644 IPR027417 -
Vvi17g0883 802 Pfam AAA+ lid domain 390 432 IPR041569 -
Vvi17g0883 802 Pfam AAA+ lid domain 666 707 IPR041569 -
Vvi17g0883 802 PANTHER AAA-FAMILY ATPASE 400 762 - -
Vvi17g0883 802 Pfam ATPase family associated with various cellular activities (AAA) 238 367 IPR003959 GO:0005524|GO:0016887
Vvi17g0883 802 Pfam ATPase family associated with various cellular activities (AAA) 511 644 IPR003959 GO:0005524|GO:0016887
Vvi17g0883 802 CDD RecA-like_CDC48_r2-like 482 642 - -
Vvi17g0883 802 SMART CDC48_2_2 123 189 IPR004201 -
Vvi17g0883 802 NCBIfam CDC48 family AAA ATPase 24 760 IPR005938 GO:0016787
Vvi17g0883 802 FunFam Cell division control 48 106 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0883 Vvi-Chr17 10363559 10367946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0883 440 703 Calmodulin-binding Proteins AT3G56690 48.106 1.78e-78 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0883 K13525 - vvi:100258668 1535.01