Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0882 ATGGGTCTCAGAATCGGGGGCGAAATAGAGAAGGAAAATGGCGACGAGCTGAGTTACAGTGACTTCGTGGAGAGGTACCTTATGAAGAATCGACCTGTTGTTCTAAGAGGGCTTATGGATGGATGGAGGGCTTGTAAAGATTGGGTCACTCACACTGGACAGCCTAATCTCGAATTTTTCTCTACCCACTTTGGAAAATCCATTGTTCAGGTTGCAGATTGTGGTACCAGAGAGTTCACTGATCAAAAGCGAATGGAAATGTCTGTTGCGGAGTTCATTGACCACTGGCTCAAGGATTCTGCAAATTATCATGTTAATGCTACAACTAATGAGCATGGGAAGCCACTGGTATATTTGAAAGACTGGCATTTTGTAAAGGAGTATCCAGAATATTTAGCGTACACAACTCCGCTATTCTTTCGTGATGATTGGCTCAACCTGTATCTCGACAATTATAGTATGCATAATGAACCTGATGCTTGTCAAGAGAAAAATGAAATTAGTTGCTCTGATTATCGGTTTGTTTACATGGGAGCAAAAGGTACATGGACTCCCCTTCATGCCGATGTCTTCAGATCCTATAGTTGGTCGGCTAATGTTTGTGGGAAGAAGAAATGGCTTTTTTTGCCTCCTTCACAAAGTCATCTTGTTTTTGACAGAAATATGAAAAGCTCTGTATATAATATCTGTGAGGATGTCAATGAAGCAAAATTTCCTGGGTTTAAGAAGGCTGTTTGGTTAGAATGCATTCAAGAACAAGATGAAATTATCTTTGTGCCCAGTGGATGGTATCATCAAGTTCACAATCTGGAAGATACAATATCAATAAACCACAACTGGTTCAATGCCTATAATCTTTCTTGGGTTTGGGATTTGCTTTTGAAAGACTACAATGAGGCTAAAGAGTACATAGAGGATGTCAGGGACATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCAGCTAACACAGGCATGAACTTCTGTGATTTCTTCATCTTCATAGCATGCTTCTCATTTGCCAACTTGGTCCAGCTTTATCACCTTCATAGAGTCAATGAAAATCCCAGTTGGTGTTTATTCCCTAAAGCTCAACATTTAGCTTTGAACCTTCTTTCCGCTCAGAAAATTGTATTGAAGATGAAAACCGTAGATGCTCTGGCCGGAGATCATGCTTTGTTGCTGGATTTGAGGAAAATGATGGATGATTCAAAGTTCCTTGAACTGTGCTCTGGCTTGGACAGAACGTATAGGGGGATACACAAGGAACAACAACAAAATTATGATAAGAAGGAAACTTTGATGGATGGCTTGGGGGATTTGGATTTTATTGTGAAGTCATGTTCTCAGATCTATGCTCCCGAAGATCTTGTTAGTTTTATAGACTCTGCTGTTAAAAAACTTAGCAGAGCTTTCAACAGAGAAAGCCCTCTGCTGCCTGAATTAGATGAACTTAGGAGTCCGGATGCTCAGTAA 1482 0.4055 MGLRIGGEIEKENGDELSYSDFVERYLMKNRPVVLRGLMDGWRACKDWVTHTGQPNLEFFSTHFGKSIVQVADCGTREFTDQKRMEMSVAEFIDHWLKDSANYHVNATTNEHGKPLVYLKDWHFVKEYPEYLAYTTPLFFRDDWLNLYLDNYSMHNEPDACQEKNEISCSDYRFVYMGAKGTWTPLHADVFRSYSWSANVCGKKKWLFLPPSQSHLVFDRNMKSSVYNICEDVNEAKFPGFKKAVWLECIQEQDEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWDLLLKDYNEAKEYIEDVRDICDDFEGLCQRNLAANTGMNFCDFFIFIACFSFANLVQLYHLHRVNENPSWCLFPKAQHLALNLLSAQKIVLKMKTVDALAGDHALLLDLRKMMDDSKFLELCSGLDRTYRGIHKEQQQNYDKKETLMDGLGDLDFIVKSCSQIYAPEDLVSFIDSAVKKLSRAFNRESPLLPELDELRSPDAQ* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0882 493 FunFam JmjC domain-containing protein 4 4 282 - -
Vvi17g0882 493 SUPERFAMILY Clavaminate synthase-like 16 310 - -
Vvi17g0882 493 SMART cupin_9 117 297 IPR003347 -
Vvi17g0882 493 Gene3D Cupin 3 282 - -
Vvi17g0882 493 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 12 334 - -
Vvi17g0882 493 Pfam Cupin-like domain 21 280 IPR041667 -
Vvi17g0882 493 ProSiteProfiles JmjC domain profile. 125 297 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0882 Vvi-Chr17 10332288 10338338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0882 7 289 Glycosyltransferase AT1G78280 23.490 3.07e-16 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vvi17g0882 Cupin_8 1e-24 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0882 - - vvi:100251987 1033.86