Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0870 ATGGGAATTGTAGGACGGATGAGGGTTGTTTTTCTCTTCTTAATGGCTTCAGGCTTTGTTAGTAATTTAATGGCTGACCCAAGAACAACTGTGGCTGGATTTCAATGCAATTCAACAGAAGCTGTTTCGTCTGTTCTTCTTGCACAAAATTTTGTTCCTGCAATGGCTAATCTGAGCACTCAGGTTAATGAAGATGGGTTTGGAACTTCTATTGTGGGTGAGGCCCCAAATGCTGTTTTTGGACTTGCTCAGTGCTTCAAAGACCTTAGCTCCATTGACTGTCAACTCTGCTTCTCTGAAATTCGGTCTATTCTCCCAAAGTGCTATCCAGATACAGGTGGAAGGATATTCTTTGATGGGTGTTTTGGCCGATATGAGAATTTCTCGTTCTTCGATCAAGGTATGGATTCAGTACAGTTAAAAAACTGTTCTTCTAGCAAGAACAGTTCTCAGCCTGGTATATTTAAAGAAGCTTTAGAAAGGGTCATTGAAAGTGTGAGCTTAAAGGCTCAGAAGAATCAGGGTTTTGCGGTGGCATCCCATTCGGTCTCCAATTTGACATTACATGCTCTTGCACAATGTTGGGAGAGCTTAGATAAGAAGACCTGTAATTCGTGCCTCCAAGCTTCTGCTTCATCAATCATGTCATGTTATCCAGGTGTTGACGGCCGGTCTCTCAATGCAGGCTGTTATATGAGATATTCAAATGAGGTTTTCTGGAATTTGAGCCGGCACACTGGACTTTCTGCAGGGAGAAAGGCCCTCTATATCATATTAGGTTTGGCTGTTGGTGGATTTCTAATCTTAGCTGGAATAGGCTTGTGGAAAAAGGGGCACCTAAGACAGTCATTTGGCAAATCTTTGAAAGATATATATGGATCGGGATTATCTTCTGCTCTTGCTCACTCCCAGCTAAACTTTAGATACCAGGAATTGAGACAAGCAACTAACAATTTTGATTCATCAAACAAGCTTGGACAGGGTAGTTATGGGAGTGTCTACAAGGGAATTCTTTTGGATGGAAGAGAAGTTGCAGTGAAACGGTTGTTTCTGAATACAAGACAGTGGATTGATCAGTTCTTCAATGAGGTGCATCTGATCAACCAGGTACGCCACAAAAATCTGGTGAAGTTGCTAGGTTACAGTGTGGATGGCCAAGAGAGCTTGCTTGTTTACGACTACTACCCCAACAAGAGCTTAGATCATTTTATATTTGATGAAAATCAAGCCCAGATTTTAGACTGGAAAAAGAGGATCGATATCATTCAAGGGGTGGCAGAAGGTCTTTCTTACCTCCATGAGGAGTCTGAAATCCGAATAATCCATAGAGACATAAAAGCAAGTAATATTCTCTTGGATGACAAACTGAAGCCCAAGATAACTGACTTTGGCCTTGCAAGATCTTTCGCAGAGGACCAAACTCATCTTAGCACTGGAATAGCTGGTACCCTAGGTTATATGGCTCCTGAGTATGTTGTCCATGGGCATCTGACAGAGAAAGCTGATGTATACAGCTTTGGAGTACTTCTACTTGAAATTCTGACTGGGCAGAGGTGCAGCAATGGCACTGGAGCAAAACCCGGGCAATTTTTCTTAGCTAAGATATGGAGTCATTACAAGGCTGAAACAGTTGATGAAATAATGGACAGACATTTCTATGACGAAGAAGTGAAAGATGAGATTTTGCATGCCGTTCATGTGGGATTATTGTGCACACAAGCTACACCAAGTTACCGCCCCACAATGGCAAAAGTAGTGGAATTGCTGAGAAGCACCAAGAATCAAGAAAATGTTTTTCCAACAGATCCACCATTTTTAGATGTTTTATCAGTGGAAAACCTGGAAGAAGGTGACGGTATTCATTTGCTATCTGGGGCCTCTGCTCCTGGCTTTTCAGGATCCACGGGAAGTGTACTATATGGAAGATAA 1929 0.4209 MGIVGRMRVVFLFLMASGFVSNLMADPRTTVAGFQCNSTEAVSSVLLAQNFVPAMANLSTQVNEDGFGTSIVGEAPNAVFGLAQCFKDLSSIDCQLCFSEIRSILPKCYPDTGGRIFFDGCFGRYENFSFFDQGMDSVQLKNCSSSKNSSQPGIFKEALERVIESVSLKAQKNQGFAVASHSVSNLTLHALAQCWESLDKKTCNSCLQASASSIMSCYPGVDGRSLNAGCYMRYSNEVFWNLSRHTGLSAGRKALYIILGLAVGGFLILAGIGLWKKGHLRQSFGKSLKDIYGSGLSSALAHSQLNFRYQELRQATNNFDSSNKLGQGSYGSVYKGILLDGREVAVKRLFLNTRQWIDQFFNEVHLINQVRHKNLVKLLGYSVDGQESLLVYDYYPNKSLDHFIFDENQAQILDWKKRIDIIQGVAEGLSYLHEESEIRIIHRDIKASNILLDDKLKPKITDFGLARSFAEDQTHLSTGIAGTLGYMAPEYVVHGHLTEKADVYSFGVLLLEILTGQRCSNGTGAKPGQFFLAKIWSHYKAETVDEIMDRHFYDEEVKDEILHAVHVGLLCTQATPSYRPTMAKVVELLRSTKNQENVFPTDPPFLDVLSVENLEEGDGIHLLSGASAPGFSGSTGSVLYGR* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0870 642 SUPERFAMILY Protein kinase-like (PK-like) 305 605 IPR011009 -
Vvi17g0870 642 FunFam Cysteine-rich receptor-like protein kinase 3 139 239 - -
Vvi17g0870 642 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Vvi17g0870 642 Gene3D Transferase(Phosphotransferase) domain 1 395 602 - -
Vvi17g0870 642 SMART serkin_6 319 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0870 642 FunFam Cysteine-rich receptor-like protein kinase 2 29 130 - -
Vvi17g0870 642 ProSiteProfiles Gnk2-homologous domain profile. 137 239 IPR002902 -
Vvi17g0870 642 ProSiteProfiles Gnk2-homologous domain profile. 29 130 IPR002902 -
Vvi17g0870 642 FunFam Cysteine-rich receptor-like protein kinase 2 286 394 - -
Vvi17g0870 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Vvi17g0870 642 FunFam Cysteine-rich receptor-like protein kinase 2 395 597 - -
Vvi17g0870 642 Pfam Protein kinase domain 321 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0870 642 Gene3D - 136 239 IPR038408 -
Vvi17g0870 642 Gene3D - 29 130 IPR038408 -
Vvi17g0870 642 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 614 - -
Vvi17g0870 642 Pfam Salt stress response/antifungal 51 127 IPR002902 -
Vvi17g0870 642 Pfam Salt stress response/antifungal 143 236 IPR002902 -
Vvi17g0870 642 CDD STKc_IRAK 325 589 - -
Vvi17g0870 642 ProSiteProfiles Protein kinase domain profile. 319 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0870 642 Gene3D Phosphorylase Kinase; domain 1 289 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0870 Vvi-Chr17 10170963 10177977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0870 7 642 Receptor kinase-like Gene Family AT1G70520 42.383 2.48e-177 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi17g0870 Pkinase 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0870 - - vvi:100246742 1290.02