Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0864 ATGCATTTCTCAATCAGAATTCCTCAGTGTAAGGTATGGATCTCCCTTGTGTATTCAATGTTGTTGTTCTCTCTGTCCCTCTCCGATCCTCGAATCTCCCAAGCAGGCCTACTTTGTGGAGACACAAAGTCGGCCCCATCCATCTACATCCCAAATTTCATTCAAGTCATGGAAGCTATCGCCAAAAGTATGGTGCAACAAGGCTGGGGATATGCCAACATCACAAAAAGTCCTGTGATTTTCGGGTTATCCCAATGCTACAGTGATCTCTCAAAGGATGATTGCCTCTCCTGCTTTGCTGAGAGCCGCACCAAGCTCCCCAGATGCCTTCCTGCCATTGCAGCTCGAATATATCTTGATGGTTGCTTCCTTCGCTATGACAATTACAGCTTCTTCAACGAGAGCATTGACCCGAATCATGATATGGTTAGGTGCAGTGAGCCAAGTGGCGTTCTCAAGGATAATTACACGAGATCGGAGTTCTCGAAGAAAGTTGATGAAGTGATCAATAACGTAACTAAAACAGCTGTGCAGAAGCAGGGTTTTGCGGTGGCAGGGATGAAAGGAGGAGCGGTTGTGGCCTATGCATTGGCACAGTGTTGGAAGACAGTTGATCAGAAGGGGTGTAGAGATTGCTTGGTGAATGCTGAGTCTGCAGTGAGAAGGTGTCTGCCTGGTTCCGAGGGGAGGGCTCTGAATGCTGGCTGTTATTTGAGGTATTCTACTGAGAAATTTTACAATGACGGCACAGCAAAAAAGAGTGGTAAAGGATTGTCTGACACTGGGATGATCATCGCATTCATTTTATCAGTACTCGCGGTTTGCTTGCTCGCTTTCCTTGGTGCTTTTGTTGGCTACATACTCTTATCAAAGAGAAAAAGAAACAACAATAATGCTCTTGCTCGGATTCCAACATGTATAAACAGGTCTGACCTGAATTTCAAGTATGAAACACTTGAGAGGGCAACTAATTTTTTTGATTCTTCAAGGAAGTTAGGCCAAGGGGGAGCAGGATCTGTATTCAAGGGGACTCTCCCTGATGGGAGAACTGTTGCTGTAAAGAGATTGTTCTTCAATACGCGTCAATGGGTGGATGAGTTCTTCAATGAAGTGAACTTGATCAGCAGAATTCAACACAAGAACCTTGTGGGACTTCTGGGTTGCAGTATAGAAGGTCCAGAGAGCCTTCTAGTTTATGAATATGTACCCAACAAGAGTGTTGATCAAATCCTTTTTGGTAAAGACGGCACCCAAGGTCTAAGCTGGCAGCAGCGGTTTGAGATCATCGTCGGAACAGCTGAGGGGCTTGCGTATCTTCATGGAGGTTCTGAAGTGAAGATTATTCACAGAGACATAAAAGGCAGCAACATACTGCTTGATGAGAATCTTAATCCAAAGATTGCTGATTTTGGACTTGCAAGATGTGTGGCTCCTGATAAATCTCATGTTAGCACTGGAATTGCTGGGACACTGGGGTATATGGCACCTGAATATCTTGTTCGTGGGCAGTTATCAGAGAAAGCAGACGTTTATGCCTATGGTGTGCTGATTCTTGAGATTGTATGTGGTAGGAAGAACTGTATTTTTGTGCAGGGGTCAGACTCAGTTCTGCAAACAGTTTGGAAGCATTATAAATCAAATAGCGTTGTCCGATCTGTGGATCCCTCCTTGAAAGGTGATTTTCCACTGAATGAGGCAAGAAATGTGGTTCAGATTGGGCTGCTGTGCACGCAAGCTTCCTTTGCATTAAGGCCATCCATGTCCCAAGTAGTTCAGATGCTAACCGATCAAAACAGTGTGATTCCTGAACCTATGCAGCCTCCATTCCTGAATGCCAGTGTTCTAGACCCGAGCAATTCCCTCAAAAATTCTATTACCAGAAACTTGACTCCATCTTTTCACACAGCAACTGAACCACCATCCACTCATTCAAGCAATTCCTCTGCTATGGCTAGCCAGGAATCATACACTCCTTCAGCAATGGATGTATCAGGACCAAGGTAG 2004 0.4486 MHFSIRIPQCKVWISLVYSMLLFSLSLSDPRISQAGLLCGDTKSAPSIYIPNFIQVMEAIAKSMVQQGWGYANITKSPVIFGLSQCYSDLSKDDCLSCFAESRTKLPRCLPAIAARIYLDGCFLRYDNYSFFNESIDPNHDMVRCSEPSGVLKDNYTRSEFSKKVDEVINNVTKTAVQKQGFAVAGMKGGAVVAYALAQCWKTVDQKGCRDCLVNAESAVRRCLPGSEGRALNAGCYLRYSTEKFYNDGTAKKSGKGLSDTGMIIAFILSVLAVCLLAFLGAFVGYILLSKRKRNNNNALARIPTCINRSDLNFKYETLERATNFFDSSRKLGQGGAGSVFKGTLPDGRTVAVKRLFFNTRQWVDEFFNEVNLISRIQHKNLVGLLGCSIEGPESLLVYEYVPNKSVDQILFGKDGTQGLSWQQRFEIIVGTAEGLAYLHGGSEVKIIHRDIKGSNILLDENLNPKIADFGLARCVAPDKSHVSTGIAGTLGYMAPEYLVRGQLSEKADVYAYGVLILEIVCGRKNCIFVQGSDSVLQTVWKHYKSNSVVRSVDPSLKGDFPLNEARNVVQIGLLCTQASFALRPSMSQVVQMLTDQNSVIPEPMQPPFLNASVLDPSNSLKNSITRNLTPSFHTATEPPSTHSSNSSAMASQESYTPSAMDVSGPR* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0864 667 Gene3D - 39 131 IPR038408 -
Vvi17g0864 667 Gene3D - 150 245 IPR038408 -
Vvi17g0864 667 Pfam Salt stress response/antifungal 155 242 IPR002902 -
Vvi17g0864 667 Pfam Salt stress response/antifungal 44 129 IPR002902 -
Vvi17g0864 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Vvi17g0864 667 ProSiteProfiles Protein kinase domain profile. 326 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0864 667 CDD STKc_IRAK 332 595 - -
Vvi17g0864 667 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 83 621 - -
Vvi17g0864 667 Pfam Protein kinase domain 327 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0864 667 FunFam Cysteine-rich receptor-like protein kinase 42 57 131 - -
Vvi17g0864 667 SMART serkin_6 326 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0864 667 ProSiteProfiles Gnk2-homologous domain profile. 140 245 IPR002902 -
Vvi17g0864 667 FunFam Cysteine-rich receptor-like protein kinase 3 146 245 - -
Vvi17g0864 667 SUPERFAMILY Protein kinase-like (PK-like) 313 621 IPR011009 -
Vvi17g0864 667 FunFam Cysteine-rich receptor-like protein kinase 2 402 602 - -
Vvi17g0864 667 MobiDBLite consensus disorder prediction 630 667 - -
Vvi17g0864 667 Gene3D Phosphorylase Kinase; domain 1 287 401 - -
Vvi17g0864 667 Gene3D Transferase(Phosphotransferase) domain 1 402 603 - -
Vvi17g0864 667 FunFam Cysteine-rich receptor-like protein kinase 2 291 401 - -
Vvi17g0864 667 ProSiteProfiles Gnk2-homologous domain profile. 31 131 IPR002902 -
Vvi17g0864 667 MobiDBLite consensus disorder prediction 630 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0864 Vvi-Chr17 10011295 10014385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0864 47 616 Receptor kinase-like Gene Family AT1G70520 47.341 3.83e-176 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi17g0864 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0864 - - vvi:100250205 1303.12