Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0863 ATGGACCAACTGTACGGCCTCCACTCTCCCTCCTCCTCCGATTACCACCACCCGCCTCCATTTCCGCCGGAAAATCTGATTTCTCCGTCTCACTACCCGAATTTTAATTCTCCCGCGCCTTTTCCGATCTTCGGATCCGACCAGCTGTTGTCGGCGTCGTCTTTGGTGGTCTCTGATGCAGCTTCCATGGTGGCTGAAATTCAAGGAGGAGGTTCTGGAGAGGAGGTTTCCAGTGCTATTCGAGCCAAAATCGCTACTCATCCTCTCTATCCTAAACTTCTCCATGCTTACATCGAGTGCCAGAAGGTCGGAGCGCCACCGGAGGTTGCGTATCTGTTGGAAGAAATCCGGAGAGGAAGCGAGCTTTGCAGAAGAAACGCCGTTTCCACTTGCTTGGGTGCGGATCCCGAGCTGGATGAGTTCATGGAAACCTACTGCGATATACTGGTGAAATATAAATCGGATCTCGCCAGGCCTTTCGATGAAGCCACCGCGTTTCTGAACAACATAGAGACGCAGCTCAATACACTCTGCAATGGTGCTTCCAGAAGCTACGTTTCCGACGAAGCAGCTGGGTCATCAGAGGAGGACTTAAGTGGAGGAGAGGTGGAGGTACAAGAATGTCTTCAAACTACTGAAAATCAGGAGCTTAAGGATAAGCTATTGCGGAAATATAGTGGCTATATCAGTACCCTGAAGCATGAATTTTCGAAGACAAAGAAGAAGGGAAAGCTACCAAAGGAAGCAAGGCAAGCCCTTCTTGATTGGTGGAATATTCACTATAAATGGCCATATCCAACGGAGGAAGACAAGATCGCACTGGCTGAATCAACAGGCCTGGACCAGAAGCAGATAAACAACTGGTTCATAAACCAACGTAAACGGCACTGGAAGCCATCGGAGAACATGCAATTTGCTGTTATGGACAGTATTTATGGACCATTTTTCATGAATGAGTGA 960 0.4854 MDQLYGLHSPSSSDYHHPPPFPPENLISPSHYPNFNSPAPFPIFGSDQLLSASSLVVSDAASMVAEIQGGGSGEEVSSAIRAKIATHPLYPKLLHAYIECQKVGAPPEVAYLLEEIRRGSELCRRNAVSTCLGADPELDEFMETYCDILVKYKSDLARPFDEATAFLNNIETQLNTLCNGASRSYVSDEAAGSSEEDLSGGEVEVQECLQTTENQELKDKLLRKYSGYISTLKHEFSKTKKKGKLPKEARQALLDWWNIHYKWPYPTEEDKIALAESTGLDQKQINNWFINQRKRHWKPSENMQFAVMDSIYGPFFMNE* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0863 319 ProSiteProfiles ELK domain profile. 216 236 IPR005539 GO:0003677
Vvi17g0863 319 SMART ELK_2 216 237 IPR005539 GO:0003677
Vvi17g0863 319 SUPERFAMILY Homeodomain-like 238 313 IPR009057 -
Vvi17g0863 319 ProSitePatterns 'Homeobox' domain signature. 274 297 IPR017970 GO:0000981|GO:0006355
Vvi17g0863 319 Gene3D - 234 307 - -
Vvi17g0863 319 CDD homeodomain 248 300 IPR001356 GO:0003677
Vvi17g0863 319 Pfam Homeobox KN domain 256 295 IPR008422 GO:0003677|GO:0006355
Vvi17g0863 319 FunFam Homeobox protein knotted-1-like 2 241 303 - -
Vvi17g0863 319 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Vvi17g0863 319 SMART HOX_1 238 303 IPR001356 GO:0003677
Vvi17g0863 319 Pfam KNOX2 domain 132 178 IPR005541 GO:0003677|GO:0005634
Vvi17g0863 319 Pfam ELK domain 216 237 IPR005539 GO:0003677
Vvi17g0863 319 SMART KNOX1_2 78 122 IPR005540 GO:0003677|GO:0005634
Vvi17g0863 319 MobiDBLite consensus disorder prediction 1 23 - -
Vvi17g0863 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 306 - -
Vvi17g0863 319 ProSiteProfiles 'Homeobox' domain profile. 236 299 IPR001356 GO:0003677
Vvi17g0863 319 Pfam KNOX1 domain 79 120 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0863 Vvi-Chr17 9989722 10000084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0863 1 319 Homeobox Transcription Factor Family AT1G23380 60.606 2.67e-126 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vvi17g0863 KNOX2 4.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0863 - - vvi:100243290 631.713