Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0850 ATGTTTGGAGGCAATAACAACAACCCTGTTTTTCCAGTTTTCCTTGAGGAAAATCGTTACCAATATGATACTAATGCAATGCCCCAGTTGCAGTTATTTGGAGACTTCCCAGTTGGATGTGGTGGTAATCCCCTAAACTACATGAGAAATGACCATGCAAATGCTCTGCATGGACCAATCAAAAGAAGCAGGGAGGCAGAATCTTTTTCTAGACATCAAAAACTTCACATATCTTTGAATAATAATAACCTTTGCCATGATGAAGCTGGTCAGTCTGGGAGCATCCTGAATCCAAACCCAGTATCAACTGGGCTGAAACTTTCTTATGAGGAAGATGAGCACAACTCTTCTATTACTTCCGCAAGTGATAGCATGACCGCCGCGCTCCCTGTTATTTCATCTCTTGGTGATAATCTGAAGTCAGAGATTGATCGGCAGAAAGAGGAATTTGATCACTATATCAGAGTTCAGGAAGAAAACATCATCAAGGGTGTAAGGGAACTGAAGCAGAGACAAACAGTTTCCTTCCTAAGTTCTATAGAAAAAGGAGTAGGCAAGAAATTACGTGAGAAAGAATTCGAGATAGAAAATATGAACCGCAAGAACAAAGAACTAGTGGAGAGAGTAAAGCAGGTGACCATGGAAGTTCAGTCATGGCACTACAGAGCAAAGTACAATGAGTCTTTAGTCAATGTGCTGAAGAGCAATTTGAAGCAGGTTCTGGCACAAGGTGCCATGCAAGGGAAGGAAGGCTGTGGGGACAGTGAGGTAGATGATGCAGCATCTTACACAGACCATATCCAATTGGGCGTTGTGGGCTGTTCTGGAAATCCTACATCCATGAAGAAGCAGGTGAATTGCAGAGCTTGCAAGGTTAGAGAAGTGAGTGTGTTATTACTGCCTTGTAGACACTTGTGTCTGTGCATGGATTGTGAAGGATTTATTGACGTTTGCCCGGTTTGTCGGGTAATGAAAACTGCAAGTGTTCAAGTGTTCATGTCGTGA 1005 0.4259 MFGGNNNNPVFPVFLEENRYQYDTNAMPQLQLFGDFPVGCGGNPLNYMRNDHANALHGPIKRSREAESFSRHQKLHISLNNNNLCHDEAGQSGSILNPNPVSTGLKLSYEEDEHNSSITSASDSMTAALPVISSLGDNLKSEIDRQKEEFDHYIRVQEENIIKGVRELKQRQTVSFLSSIEKGVGKKLREKEFEIENMNRKNKELVERVKQVTMEVQSWHYRAKYNESLVNVLKSNLKQVLAQGAMQGKEGCGDSEVDDAASYTDHIQLGVVGCSGNPTSMKKQVNCRACKVREVSVLLLPCRHLCLCMDCEGFIDVCPVCRVMKTASVQVFMS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0850 334 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 56 331 IPR017066 -
Vvi17g0850 334 CDD mRING-HC-C3HC5_CGRF1-like 287 322 - -
Vvi17g0850 334 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 270 333 - -
Vvi17g0850 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 334 IPR013083 -
Vvi17g0850 334 PIRSF SBP1_RNase_bind 1 334 IPR017066 -
Vvi17g0850 334 Coils Coil 188 215 - -
Vvi17g0850 334 ProSiteProfiles Zinc finger RING-type profile. 287 322 IPR001841 -
Vvi17g0850 334 Pfam Zinc finger, C3HC4 type (RING finger) 285 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0850 Vvi-Chr17 9863143 9867181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0850 283 323 C3H Transcription Factor Family AT1G73950 51.220 8.68e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0850 K19042 - vvi:100262147 681.019