Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0848 ATGGATTTTGATAGAAAGTACAAGGAAAATCTTGGCTCTCAGCCAATGTTATTGCCTGAGAATTACCTGAAATCTTACATGGGAGATGGTGCGTTTTCCTTAGAAGCCTGTTCATCAAAAGCTTTCTTCCAAGATTTCCACCATCTCGATCATCAATTTCCCACCAATGCGTCATCAAAGACCCTCCAATTCGGGGTCCAAACTGCTTGCTTGGATCCCTTCGACAGTTTCACATATGGGTCTGGCATGAATCTCGATGTTTACGAATTGAAGCCTTATGCAGAAAACGTTGGAGTGATGGAGAATTTTCAGAGCAATAATGGAGGAGGATACCTGTTGCACCATCATCAGAGAGCCGCTGCTGCAGATATGATGGGGCTGGACCGAGGCCGAGTGGCCTTCAACTGTCAAGAAATCAAGCCTGTAAACTTTGTTATACCAGAGGAAGTGTGCATCGCGGCAGAGAATAGTTTATACAAGAAAATCAGCATGAGTACTGCTAAGAATGGAGCTTCGCCGGCGGCCAAAAAGACCTACAAAGGTAGAAAGAAAACCCATGTGGTTAAGGGGCAATGGACAATTGAAGAAGACAGACTGTTGATTCAACTGGTGGAACAGTACGGGGTTAGAAAATGGAGCCTCATTGCTCAGATGCTGAATGGGAGGATAGGGAAGCAGTGCAGGGAGAGATGGCACAATCACCTGAGGCCTAACATTAAGAAGGATATATGGAGTGAAGAGGAGGACAAGATTCTTATTCAAGCCCATGCAGAAATAGGAAACAAATGGGCGGAAATTGCAAAGAGGCTGCCTGGAAGAACTGAAAACTCCATAAAGAACCATTGGAATGCTACCAAAAGAAGGCAGCTCTCGAGGAGAAAATGCCGCTCAAAGTATCCAAGACAAAGCACCCTTCTGCAGAACTATATCAAGAGCCTCAACTTGGACTCAAGGACAGTGGATTACCAGAAAAACCCTACTGCAAATAACCCCATGGCAGCTAATAATACTGTCCTCAGACCACCCATGAACAGGCCAGAGATCTCAGACTTCTGCCCTGGCGACGGCGTAGTTCCGAATTTCGATTATGAGGAGGTCCCAGATTTCTCCTTTGATGCTAACATCTTTCAAGAGAATTGCAGTATCGACTCTCTCCTCAATGAGATGTCTAGTGCTCCTACTGGTGATGAGAAAGGGATTGAGATGGAGAATATGCCATTGGACATGGCTTCATTGTTGCAGTGTGAAGTGAAGAAGGAGATGGATTTGGTGGAGATAATTTCTCAAGTCAATCTCTGA 1299 0.4503 MDFDRKYKENLGSQPMLLPENYLKSYMGDGAFSLEACSSKAFFQDFHHLDHQFPTNASSKTLQFGVQTACLDPFDSFTYGSGMNLDVYELKPYAENVGVMENFQSNNGGGYLLHHHQRAAAADMMGLDRGRVAFNCQEIKPVNFVIPEEVCIAAENSLYKKISMSTAKNGASPAAKKTYKGRKKTHVVKGQWTIEEDRLLIQLVEQYGVRKWSLIAQMLNGRIGKQCRERWHNHLRPNIKKDIWSEEEDKILIQAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQLSRRKCRSKYPRQSTLLQNYIKSLNLDSRTVDYQKNPTANNPMAANNTVLRPPMNRPEISDFCPGDGVVPNFDYEEVPDFSFDANIFQENCSIDSLLNEMSSAPTGDEKGIEMENMPLDMASLLQCEVKKEMDLVEIISQVNL* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0848 432 FunFam Transcription factor MYB119 242 306 - -
Vvi17g0848 432 Gene3D - 188 241 - -
Vvi17g0848 432 ProSiteProfiles Myb-like domain profile. 236 286 IPR001005 -
Vvi17g0848 432 CDD SANT 244 286 IPR001005 -
Vvi17g0848 432 FunFam Transcriptional activator Myb isoform A 188 241 - -
Vvi17g0848 432 Gene3D - 243 308 - -
Vvi17g0848 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 240 290 IPR017930 -
Vvi17g0848 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 239 IPR017930 -
Vvi17g0848 432 CDD SANT 192 235 IPR001005 -
Vvi17g0848 432 Pfam Myb-like DNA-binding domain 244 283 IPR001005 -
Vvi17g0848 432 Pfam Myb-like DNA-binding domain 189 235 IPR001005 -
Vvi17g0848 432 SUPERFAMILY Homeodomain-like 187 282 IPR009057 -
Vvi17g0848 432 PANTHER MYB PROTEIN-RELATED 167 323 - -
Vvi17g0848 432 ProSiteProfiles Myb-like domain profile. 184 235 IPR001005 -
Vvi17g0848 432 SMART sant 240 288 IPR001005 -
Vvi17g0848 432 SMART sant 188 237 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0848 Vvi-Chr17 9841308 9843240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0848 62 389 MYB Transcription Factor Family AT4G18770 46.045 3.37e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi17g0848 Myb_DNA-binding 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0848 K09422 - vvi:100243240 873.618