Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0841 ATGGAGGGAGCAAATGGGTACAGAAAGGGTCTGTGGACAGTGGAGGAAGACAGAATTCTCATGGATTACATAAGGGTTCATGGTAAAGGCAAGTGGAATCGCATTGCCAAAGTCACAGGTTTGAAGAGGTGTGGCAAGAGTTGCAGATTAAGGTGGATGAATTATCTAAGTCCCAGTGTAAAGCGTGGGGATTTCTCTCAGGAAGAAGACGACCTCATCATCCGCCTTCATAATCTCCTTGGAAACAGGTGGTCTTTGATTGCTGGGCGTGTGCCGGGAAGGACTGATAACCAAGTGAAGAACCATTGGAACACTCATTTGAGCAAAAAGCTCGGAATCAAGAAGCACAAAAGTAAAAGTGAAGGTTCCTCACAGGCACAATCCATTGAAGCTAAGGAGGCTCACAGTATGCCATCAAACCCAGATTCTAAACCACCTTCAGAAGACAAAAATGGAGAAACTGGCCCCGAAGTGAGGGAAGATCTCCCCAGAAGCATGACCATGTTGGCTAACACACAAGATATGGAAATGGGCACAGAGGATTATGAGAGCTCTCTTTGGTTTTCTACTGGTGATTTAGATCTAAATGCTCCCAGTTTAATGCAATTTCTTGATGGCCATGTTCTTGATTTTGTTTGGGATGGCTTGTAA 651 0.447 MEGANGYRKGLWTVEEDRILMDYIRVHGKGKWNRIAKVTGLKRCGKSCRLRWMNYLSPSVKRGDFSQEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLSKKLGIKKHKSKSEGSSQAQSIEAKEAHSMPSNPDSKPPSEDKNGETGPEVREDLPRSMTMLANTQDMEMGTEDYESSLWFSTGDLDLNAPSLMQFLDGHVLDFVWDGL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0841 216 MobiDBLite consensus disorder prediction 146 160 - -
Vvi17g0841 216 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vvi17g0841 216 MobiDBLite consensus disorder prediction 95 164 - -
Vvi17g0841 216 Gene3D - 7 62 - -
Vvi17g0841 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Vvi17g0841 216 FunFam MYB-related transcription factor 8 61 - -
Vvi17g0841 216 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Vvi17g0841 216 CDD SANT 12 56 IPR001005 -
Vvi17g0841 216 CDD SANT 65 107 IPR001005 -
Vvi17g0841 216 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 164 - -
Vvi17g0841 216 SMART sant 8 58 IPR001005 -
Vvi17g0841 216 SMART sant 61 109 IPR001005 -
Vvi17g0841 216 FunFam Transcription factor WER 63 134 - -
Vvi17g0841 216 MobiDBLite consensus disorder prediction 122 145 - -
Vvi17g0841 216 Gene3D - 64 138 - -
Vvi17g0841 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 56 IPR017930 -
Vvi17g0841 216 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vvi17g0841 216 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Vvi17g0841 216 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0841 Vvi-Chr17 9703479 9704324 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0841 7 209 MYB Transcription Factor Family AT5G40330 50.704 4.33e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi17g0841 Myb_DNA-binding 8.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0841 K09422 - vvi:100244963 447.588